Evidence map›Paper›PMID 39511299›Full record

ArticleScientific reports2024

Discovery of the first Tn630 member and the closest homolog of IS630 from viruses.

Yanping Hu, Guangyou Duan, Haohao Yan, Yutong Guo, Jia Chang, Mingbing Zhou, Shuangyong Yan, Wenjing Li, Cihan Ruan, Shan Gao

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Characterization of defensome genes and mobile genetic Elements in different types of pasture soil agroecosystems from the Brazilian Amazon.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yanping HuQinghai Key Laboratory of Qinghai-Tibet Plateau Biological Resources, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, 810008, Qinghai, People's Republic of China.
Guangyou DuanSchool of Life Sciences, Qilu Normal University, Jinan, 250200, Shandong, People's Republic of China.
Haohao YanCollege of Life Sciences, Nankai University, Tianjin, 300071, People's Republic of China.
Yutong GuoCollege of Life Sciences, Nankai University, Tianjin, 300071, People's Republic of China.
Jia ChangCollege of Life Sciences, Nankai University, Tianjin, 300071, People's Republic of China.
Mingbing ZhouThe State Key Laboratory of Subtropical Silviculture, Bamboo Industry Institute, Zhejiang A&F University, Hangzhou, 311300, Zhejiang, People's Republic of China.
Shuangyong YanTianjin Academy of Agricultural Sciences, Institute of Crop Research, Tianjin, 300381, People's Republic of China.
Wenjing LiQinghai Key Laboratory of Qinghai-Tibet Plateau Biological Resources, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, 810008, Qinghai, People's Republic of China.
Cihan RuanDepartment of Computer Science and Engineering, Santa Clara University, Santa Clara, CA, 95050, USA. cruan@scu.edu.
Shan GaoCollege of Life Sciences, Nankai University, Tianjin, 300071, People's Republic of China. gao_shan@mail.nankai.edu.cn.

Funding

the Open Project of Qinghai Key Laboratory of Qinghai-Tibet Plateau Biological Resources 2024-KF-03
6 · The paper itself

Abstract

IS630/Tc1/mariner (ITm) represents the most widely distributed superfamily of DNA transposons in nature. Currently, bioinformatics research on ITm members primarily involves collecting data of existing and emerging members and organizing them into new groups or families. In the present study, our survey revealed that Tc1 and IS630 members have a broad host range, spanning across all six biological kingdoms (bacteria, fungi, plantae, animalia, archaea and protista) and viruses. The primary discoveries include the first Tn630 member-Tn630-NC1 and the closest homolog of IS630 from viruses-Tc1-C#1. By incorporating our discoveries into existing knowledge, we proposed a model to elucidate the formation of composite transposons. Organization of Tc1 and IS630 members into groups across biological kingdoms facilitates data collection for future research, particularly on their horizontal transfer between different kingdoms. The formation of composite transposons may result from asymmetric of terminal inverted repeats. IS630 should be merged with Tc1 into a single family IS630/Tc1. Furthermore, IS630 and its homologs constitute a valuable resource for studying horizontal gene transfer between gut bacteria and phages, opening up new avenues for research in this field.

Indexed as

DNA Transposable ElementsAnimalsBacteriaHost SpecificityPhylogenyVirusesDNA Transposable ElementsHGTITmMarinerPogoTE

Identifiers

PMID39511299
PMCPMC11544213

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.