Evidence map›Paper›PMID 39508769›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Analysis of the structure and interactions of the SARS-CoV-2 ORF7b accessory protein.

Minh-Ha Nguyen, Gyula Palfy, Marie-Laure Fogeron, Martí Ninot Pedrosa, Johannes Zehnder, Vaclav Rimal, Morgane Callon, Lauriane Lecoq, Alexander Barnes, Beat H Meier and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Structural Features of a Tiny Viral Protein, ORF7b of SARS-CoV-2.International journal of molecular sciences · 2026
    Article
  2. Article
  3. "Fertile" Mutations in SARS-CoV-2 RNA More Frequently Occurred in Hairpin Loops That Determine Virus Evolution.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2025
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Minh-Ha Nguyen *Molecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche 5086 CNRS/Université de Lyon, 69367 Lyon, France.ORCID 0000-0003-3603-9137
Gyula Palfy *Department of Chemistry and Applied Biosciences, Institute of Molecular Physical Sciences, Eidgenössische Technische Hochschule Zurich, 8093 Zurich, Switzerland.ORCID 0000-0003-1590-5331
Marie-Laure FogeronMolecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche 5086 CNRS/Université de Lyon, 69367 Lyon, France.
Martí Ninot PedrosaMolecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche 5086 CNRS/Université de Lyon, 69367 Lyon, France.ORCID 0000-0003-2851-9990
Johannes ZehnderDepartment of Chemistry and Applied Biosciences, Institute of Molecular Physical Sciences, Eidgenössische Technische Hochschule Zurich, 8093 Zurich, Switzerland.
Vaclav RimalDepartment of Chemistry and Applied Biosciences, Institute of Molecular Physical Sciences, Eidgenössische Technische Hochschule Zurich, 8093 Zurich, Switzerland.ORCID 0000-0001-5680-9667
Morgane CallonMolecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche 5086 CNRS/Université de Lyon, 69367 Lyon, France.ORCID 0000-0002-0618-2293
Lauriane LecoqMolecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche 5086 CNRS/Université de Lyon, 69367 Lyon, France.ORCID 0000-0002-5995-3733
Alexander BarnesDepartment of Chemistry and Applied Biosciences, Institute of Molecular Physical Sciences, Eidgenössische Technische Hochschule Zurich, 8093 Zurich, Switzerland.
Beat H MeierDepartment of Chemistry and Applied Biosciences, Institute of Molecular Physical Sciences, Eidgenössische Technische Hochschule Zurich, 8093 Zurich, Switzerland.ORCID 0000-0002-9107-4464
Anja BöckmannMolecular Microbiology and Structural Biochemistry, Unité Mixte de Recherche 5086 CNRS/Université de Lyon, 69367 Lyon, France.ORCID 0000-0001-8149-7941

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) 200021_201070/1Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (SNF) 31CA30_196256
6 · The paper itself

Abstract

SARS-CoV-2 carries a sizeable number of proteins that are accessory to replication but may be essential for virus-host interactions and modulation of the host immune response. Here, we investigated the structure and interactions of the largely unknown ORF7b, a small membranous accessory membrane protein of SARS-CoV-2. We show that structural predictions indicate a transmembrane (TM) leucine zipper for ORF7b, and experimentally confirm the predominantly α-helical secondary structure within a phospholipid membrane mimetic by solid-state NMR. We also show that ORF7b forms heterogeneous higher-order multimers. We determined ORF7b interactions with cellular TM leucine zipper proteins using both biochemical and NMR approaches, providing evidence for ORF7b interaction with the TM domains of E-cadherin, as well as phospholamban. Our results place ORF7b as a hypothetical interferer in cellular processes that utilize leucine zipper motifs in transmembrane multimerization domains.

Indexed as

SARS-CoV-2CadherinsCOVID-19HumansLeucine ZippersModels, MolecularProtein BindingProtein MultimerizationViral ProteinsViral Regulatory and Accessory ProteinsCadherinsViral ProteinsViral Regulatory and Accessory ProteinsinteractionsORF7bSARS-CoV-2solid-state NMRstructure

Identifiers

PMID39508769
PMCPMC11573672

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.