Evidence map›Paper›PMID 39508605›Full record

ArticleJournal of virology2024

Inducible cell lines producing replication-defective human immunodeficiency virus particles containing envelope glycoproteins stabilized in a pretriggered conformation.

Haitao Ding, Hanh T Nguyen, Wenwei Li, Ashlesha Deshpande, Shijian Zhang, Fan Jiang, Zhiqing Zhang, Saumya Anang, Walther Mothes, Joseph Sodroski and 1 more

Abstract read
In one paragraph

Article in Journal of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Haitao Ding *Department of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Hanh T Nguyen *Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Wenwei Li *Department of Microbial Pathogenesis, Yale University, New Haven, Connecticut, USA.
Ashlesha DeshpandeDepartment of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Shijian ZhangDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Fan JiangDepartment of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Zhiqing ZhangDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Saumya AnangDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Walther MothesDepartment of Microbial Pathogenesis, Yale University, New Haven, Connecticut, USA.ORCID 0000-0002-3367-7240
Joseph SodroskiDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID 0000-0002-9750-1615
John C KappesDepartment of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, USA.ORCID 0000-0002-7586-2815

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Paul A. Goepfert · 1988 to 2026
$84.1M
Conformational Landscape of the HIV-1 Envelope GlycoproteinsR01AI124982 · NIAID · DANA-FARBER CANCER INST · PI SODROSKI, JOSEPH G · 2016 to 2025
$6.7M
HIV-1 Env structure and function assessed by parallel smFRET and cryoETR01AI150560 · NIAID · YALE UNIVERSITY · PI BLANCHARD, SCOTT C, LIU, JUN · 2019 to 2022
$3.4M
Probing functional HIV-1 envelope glycoprotein conformations with novel potent CD4-mimetic compoundsR01AI176904 · NIAID · DANA-FARBER CANCER INST · PI WAYNE A. HENDRICKSON, WALTHER H MOTHES · 2023 to 2026
$3.4M
Combining Molecular Simulations and Biophysical Methods to Characterize Conformational Dynamics of the HIV-1 Envelope GlycoproteinR01AI178833 · NIAID · DREXEL UNIVERSITY · PI CAMERON F ABRAMS, WALTHER H MOTHES · 2023 to 2026
$3.2M
HIV-1 Env protein structure and function assessed by parallel smFRET and cryoETR37AI150560 · NIAID · YALE UNIVERSITY · PI WALTHER H MOTHES · 2023 to 2026
$3.2M
Generating Native Env Glycosylation in HIV Vaccine CandidatesR01AI125093 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DESAIRE, HEATHER R · 2016 to 2019
$2.7M
Enrichment of the State-1 Conformation of the HIV-1 Envelope GlycoproteinR01AI145547 · NIAID · DANA-FARBER CANCER INST · PI SODROSKI, JOSEPH G · 2019 to 2021
$2.2M
NIAID NIH HHS P30 AI027767NIAID NIH HHS R01 AI124982NIAID NIH HHS R01 AI125093NIAID NIH HHS R01 AI145547NIAID NIH HHS R01 AI150560NIAID NIH HHS R01 AI176904NIAID NIH HHS R01 AI178833NIAID NIH HHS R37 AI150560
6 · The paper itself

Abstract

During the process by which human immunodeficiency virus (HIV-1) enters cells, the envelope glycoprotein (Env) trimer on the virion surface engages host cell receptors. Binding to the receptor CD4 induces Env to undergo transitions from a pretriggered, "closed" (State-1) conformation to more "open" (State 2/3) conformations. Most broadly neutralizing antibodies (bNAbs), which are difficult to elicit, recognize the pretriggered (State-1) conformation. More open Env conformations are recognized by poorly neutralizing antibodies (pNAbs), which are readily elicited during natural infection and vaccination with current Env immunogens. Env heterogeneity likely contributes to HIV-1 persistence by skewing antibody responses away from the pretriggered conformation. The conformationally flexible gp160 Env precursor on the infected cell or virion surface potentially presents multiple pNAb epitopes to the host immune system. Although proteolytic cleavage to produce the functional, mature Env trimer [(gp120/gp41)

Indexed as

Antibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusHIV-1HIV AntibodiesProtein ConformationVirionCell LineEpitopesHEK293 CellsHIV Envelope Protein gp120HIV Envelope Protein gp160HIV InfectionsHumansVirus ReplicationAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusEpitopesHIV AntibodiesHIV Envelope Protein gp120HIV Envelope Protein gp160broadly neutralizing antibodyEnv stabilized in pretriggered conformationHIV-1membrane Envproteolytic cleavagereplication-defective provirusvaccinevirionvirus-like particle

Identifiers

PMID39508605
PMCPMC11650979

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.