Evidence map›Paper›PMID 39508593›Full record

ArticlemSystems2024

Metabolic capabilities are highly conserved among human nasal-associated

Tommy H Tran, Isabel F Escapa, Ari Q Roberts, Wei Gao, Abiola C Obawemimo, Julia A Segre, Heidi H Kong, Sean Conlan, Matthew S Kelly, Katherine P Lemon

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. D-alanine aminotransferase (Dat) promotesbioRxiv : the preprint server for biology · 2026
    Article
  2. Microbial Landscape of Bull (Animals : an open access journal from MDPI · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. iScience · 2025
    Article
  8. Article
  9. International journal of systematic and evolutionary microbiology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Description of two novelbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Tommy H TranAlkek Center for Metagenomics & Microbiome Research, Department of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0009-0001-2566-7771
Isabel F Escapa *Alkek Center for Metagenomics & Microbiome Research, Department of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-1454-7205
Ari Q Roberts *Alkek Center for Metagenomics & Microbiome Research, Department of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, Texas, USA.
Wei GaoThe Forsyth Institute (Microbiology), Cambridge, Massachusetts, USA.ORCID 0000-0001-7510-7863
Abiola C ObawemimoAlkek Center for Metagenomics & Microbiome Research, Department of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0009-0005-7982-644X
Julia A SegreMicrobial Genomics Section, Translational and Functional Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA.ORCID 0000-0001-6860-348X
Heidi H KongDermatology Branch, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, Maryland, USA.ORCID 0000-0003-4424-064X
Sean ConlanMicrobial Genomics Section, Translational and Functional Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA.ORCID 0000-0001-6848-3465
Matthew S KellyDivision of Pediatric Infectious Diseases, Duke University School of Medicine, Durham, North Carolina, USA.ORCID 0000-0001-8819-2315
Katherine P LemonAlkek Center for Metagenomics & Microbiome Research, Department of Molecular Virology & Microbiology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0003-1542-1679

Funding

Mechanisms of Corynebacterium-Dolosigranulum Interactions that Shape Human Nasal MicrobiotaR35GM141806 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LEMON, KATHERINE PAIGE · 2021 to 2025
$2.0M
Impact of Commensal Corynebacterium Species on Pathogen Colonization and Microbiota CompositionR01GM117174 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LEMON, KATHERINE PAIGE · 2016 to 2019
$1.5M
Nasopharyngeal Microbiome and Risk of Bacterial Pathogen Colonization in InfantsK23AI135090 · NIAID · DUKE UNIVERSITY · PI KELLY, MATTHEW SCOTT · 2018 to 2022
$860k
Forsyth Institute FPILOT45HHS | NIH | National Human Genome Research Institute (NHGRI)HHS | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS)HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35 GM141806, R01 GM117174NIAID NIH HHS K23 AI135090NIGMS NIH HHS R01 GM117174NIGMS NIH HHS R35 GM141806
6 · The paper itself

Abstract

IMPORTANCE: Pangenomic analysis with estimation of functional capabilities facilitates our understanding of the full biologic diversity of bacterial species. We performed systematic genomic, phylogenomic, and pangenomic analyses with qualitative estimation of the metabolic capabilities of four common human nasal

Indexed as

CorynebacteriumGenome, BacterialPhylogenyBotswanaGenomicsHumansMicrobiotaNoseUnited StatesCorynebacteriumCorynebacterium accolensCorynebacterium propinquumCorynebacterium pseudodiphtheriticumCorynebacterium tuberculostearicummetabolismnasal microbiotapangenomicsphylogenetics

Identifiers

PMID39508593
PMCPMC11651106

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.