Evidence map›Paper›PMID 39507318›Full record

ArticleJournal of structural biology: X2024

Assessment of submicron bone tissue composition in plastic-embedded samples using optical photothermal infrared (O-PTIR) spectral imaging and machine learning.

Isha Dev, Sofia Mehmood, Nancy Pleshko, Iyad Obeid, William Querido

Abstract read
In one paragraph

Article in Journal of structural biology: X, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Isha DevDepartment of Bioengineering, Temple University, Philadelphia, PA, 19122, USA.
Sofia MehmoodDepartment of Bioengineering, Temple University, Philadelphia, PA, 19122, USA.
Nancy PleshkoDepartment of Bioengineering, Temple University, Philadelphia, PA, 19122, USA.
Iyad ObeidDepartment of Electrical and Computer Engineering, Temple University, Philadelphia, PA 19122, USA.
William QueridoDepartment of Bioengineering, Temple University, Philadelphia, PA, 19122, USA.

Funding

Multifactorial contribution of bone nanoscale composition to tissue quality in osteoporosisR21AR082129 · NIAMS · THE TRUSTEES OF THE STEVENS INSTITUTE OF TECHNOLOGY · PI QUERIDO, WILLIAM · 2023 to 2024
$361k
NIAMS NIH HHS R21 AR082129
6 · The paper itself

Abstract

Understanding the composition of bone tissue at the submicron level is crucial to elucidate factors contributing to bone disease and fragility. Here, we introduce a novel approach utilizing optical photothermal infrared (O-PTIR) spectroscopy and imaging coupled with machine learning analysis to assess bone tissue composition at 500 nm spatial resolution. This approach was used to evaluate thick bone samples embedded in typical poly(methyl methacrylate) (PMMA) blocks, eliminating the need for cumbersome thin sectioning. We demonstrate the utility of O-PTIR imaging to assess the distribution of bone tissue mineral and protein, as well as to explore the structure-composition relationship surrounding microporosity at a spatial resolution unattainable by conventional infrared imaging modalities. Using bone samples from wildtype (WT) mice and from a mouse model of osteogenesis imperfecta (OIM), we further showcase the application of O-PTIR spectroscopy to quantify mineral content, crystallinity, and carbonate content in spatially defined regions across the cortical bone. Notably, we show that machine learning analysis using support vector machine (SVM) was successful in identifying bone phenotypes (typical in WT, fragile in OIM) based on input of spectral data, with over 86 % of samples correctly identified when using the collagen spectral range. Our findings highlight the potential of O-PTIR spectroscopy and imaging as valuable tools for exploring bone submicron composition.

Indexed as

BiomineralizationBone fragilityBone tissue compositionMachine learningOptical photothermal infrared (O-PTIR) spectroscopy and imagingSubmicron resolution

Identifiers

PMID39507318
PMCPMC11539169

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.