Evidence map›Paper›PMID 39506859›Full record

ArticleGenome medicine2024

Curating genomic disease-gene relationships with Gene2Phenotype (G2P).

T Michael Yates, Morad Ansari, Louise Thompson, Sarah E Hunt, Elena Cibrian Uhalte, Rachel J Hobson, Joseph A Marsh, Caroline F Wright, Helen V Firth

Abstract read
In one paragraph

Article in Genome medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  11. Common and rare variant genetic contributions in African Americans with autism.medRxiv : the preprint server for health sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

T Michael YatesSchool of Informatics, University of Edinburgh, Edinburgh, UK.
Morad AnsariSouth East Scotland Genetic Service, Western General Hospital, Edinburgh, UK.
Louise ThompsonSouth East Scotland Genetic Service, Western General Hospital, Edinburgh, UK.
Sarah E HuntEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. seh@ebi.ac.uk.
Elena Cibrian UhalteEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Rachel J HobsonWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Joseph A MarshMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.
Caroline F WrightInstitute of Clinical and Biomedical Clinical Sciences, University of Exeter, Exeter, UK.
Helen V FirthWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK. hvf21@cam.ac.uk.ORCID 0000-0002-6410-0882

Funding

Wellcome Trust
6 · The paper itself

Abstract

Genetically determined disorders are highly heterogenous in clinical presentation and underlying molecular mechanism. The evidence underpinning these conditions in the peer-reviewed literature requires robust critical evaluation for diagnostic use. Here, we present a structured curation process for Gene2Phenotype (G2P). This draws on multiple lines of clinical, bioinformatic and functional evidence. The process utilises and extends existing terminologies, allows for precise definition of the molecular basis of disease, and confidence levels to be attributed to a given gene-disease assertion. In-depth disease curation using this process will prove useful in applications including in diagnostics, research and development of targeted therapeutics. G2P: www.ebi.ac.uk/gene2phenotype .

Indexed as

PhenotypeComputational BiologyDatabases, GeneticGenetic Association StudiesGenetic Diseases, InbornGenetic Predisposition to DiseaseGenomicsHumansDisease mechanismGene curationGenomic variant filtering

Identifiers

PMID39506859
PMCPMC11539801

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.