Evidence map›Paper›PMID 39506632›Full record

ArticleBMC bioinformatics2024

Rapid bacterial identification through volatile organic compound analysis and deep learning.

Bowen Yan, Lin Zeng, Yanyi Lu, Min Li, Weiping Lu, Bangfu Zhou, Qinghua He

Abstract read
In one paragraph

Article in BMC bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bowen YanResearch Department, Daping Hosipital, Army Medical University, Chongqing, 400042, China.
Lin ZengResearch Department, Daping Hosipital, Army Medical University, Chongqing, 400042, China.
Yanyi LuResearch Department, Daping Hosipital, Army Medical University, Chongqing, 400042, China.
Min LiLaboratory Department, Daping Hosipital, Army Medical University, Chongqing, 400042, China.
Weiping LuLaboratory Department, Daping Hosipital, Army Medical University, Chongqing, 400042, China.
Bangfu ZhouResearch Department, Daping Hosipital, Army Medical University, Chongqing, 400042, China.
Qinghua HeResearch Department, Daping Hosipital, Army Medical University, Chongqing, 400042, China. heqinghua@tmmu.edu.cn.

Funding

Chongqing Municipal Public Health Bureau, Chongqing People's Municipal Government 2024QNXM021National International Science and Technology Cooperation Project of China 2014DFA31560
6 · The paper itself

Abstract

backgroundThe increasing antimicrobial resistance caused by the improper use of antibiotics poses a significant challenge to humanity. Rapid and accurate identification of microbial species in clinical settings is crucial for precise medication and reducing the development of antimicrobial resistance. This study aimed to explore a method for automatic identification of bacteria using Volatile Organic Compounds (VOCs) analysis and deep learning algorithms.

resultsAlexNet, where augmentation is applied, produces the best results. The average accuracy rate for single bacterial culture classification reached 99.24% using cross-validation, and the accuracy rates for identifying the three bacteria in randomly mixed cultures were SA:98.6%, EC:98.58% and PA:98.99%, respectively.

conclusionThis work provides a new approach to quickly identify bacterial microorganisms. Using this method can automatically identify bacteria in GC-IMS detection results, helping clinical doctors quickly detect bacterial species, accurately prescribe medication, thereby controlling epidemics, and minimizing the negative impact of bacterial resistance on society.

Indexed as

BacteriaDeep LearningVolatile Organic CompoundsAlgorithmsHumansVolatile Organic CompoundsAlexnetBacteria classificationDeep learningGC-IMSVolatile organic compounds analysis

Identifiers

PMID39506632
PMCPMC11539783

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.