Evidence map›Paper›PMID 39506086›Full record

ArticleCommunications biology2024

Mutational signature analyses in multi-child families reveal sources of age-related increases in human germline mutations.

Habiballah Shojaeisaadi, Andrew Schoenrock, Matthew J Meier, Andrew Williams, Jill M Norris, Nicholette D Palmer, Carole L Yauk, Francesco Marchetti

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Integrated Multiomic Profiling Enhances Risk Stratification and Prognostication in Canine Osteosarcoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  3. Effect of methylation on genome mutability in cattle.Genetics, selection, evolution : GSE · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Habiballah ShojaeisaadiEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, Canada.ORCID 0000-0001-8043-4391
Andrew SchoenrockEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, Canada.
Matthew J MeierEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, Canada.ORCID 0000-0001-8199-8754
Andrew WilliamsEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, Canada.ORCID 0000-0002-7637-7686
Jill M NorrisDepartment of Epidemiology, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.ORCID 0000-0001-8674-2598
Nicholette D PalmerDepartment of Biochemistry, Wake Forest School of Medicine, Winston-Salem, NC, USA.ORCID 0000-0001-8883-2511
Carole L YaukDepartment of Biology, University of Ottawa, Ottawa, ON, Canada.ORCID 0000-0002-6725-3454
Francesco MarchettiEnvironmental Health Science and Research Bureau, Health Canada, Ottawa, ON, Canada. francesco.marchetti@hc-sc.gc.ca.ORCID 0000-0002-9435-4867

Funding

Genetic & Epidemiologic Predictors of Glucose Homeostasis Measures in HispanicsR01DK085175 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WAGENKNECHT, LYNNE E, WATANABE, RICHARD M · 2010 to 2013
$6.9M
IRAS FAMILY STUDY--GENETICS OF INSULIN RESISTANCER01HL060944 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WAGENKNECHT, LYNNE E · 1999 to 2009
$5.5M
Exome Sequencing to Identify CVD Risk Variants in Hispanics & African AmericansR01HG007112 · NHGRI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BOWDEN, DONALD W, LANGEFELD, CARL D · 2012 to 2016
$4.8M
Genetic and Epidemiological Predictors of Glucose Homeostasis MeasuresR01DK118062 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ALLRED, NICHOLETTE D. · 2019 to 2024
$3.3M
IRAS FAMILY STUDY: GENETICS OF INSULIN RESISTANCER01HL060919 · NHLBI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LORENZO, CARLOS · 1999 to 2008
$2.7M
IRAS FAMILY STUDY--GENETICS OF INSULIN RESISTANCER01HL061019 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI NORRIS, JILL M · 1999 to 2009
$2.6M
EFFECTS OF SUBSTRATE ON THE BIOENERGETICS OF THE HEARTF32HL007112 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI PIKE, MARTIN M · 1985 to 1987
–
Canada Research Chairs (Chaires de recherche du Canada) CRC-2020-00060Gouvernement du Canada | Health Canada (Santé Canada) Genomics Research and Development InitiativeNHGRI NIH HHS R01 HG007112NHLBI NIH HHS R01 HL060919NHLBI NIH HHS R01 HL060944NHLBI NIH HHS R01 HL061019NIDDK NIH HHS R01 DK085175NIDDK NIH HHS R01 DK118062U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HG007112U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL060944, HL061019 and HL060919U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) DK085175 and DK118062Wellcome Trust
6 · The paper itself

Abstract

Whole-genome sequencing studies of parent-offspring trios have provided valuable insights into the potential impact of de novo mutations (DNMs) on human health and disease. However, the molecular mechanisms that drive DNMs are unclear. Studies with multi-child families can provide important insight into the causes of inter-family variability in DNM rates but they are highly limited. We characterized 2479 de novo single nucleotide variants (SNVs) in 13 multi-child families of Mexican-American ethnicity. We observed a strong paternal age effect on validated de novo SNVs with extensive inter-family variability in the yearly rate of increase. Children of older fathers showed more C > T transitions at CpG sites than children from younger fathers. Validated SNVs were examined against one cancer (COSMIC) and two non-cancer (human germline and CRISPR-Cas 9 knockout of human DNA repair genes) mutational signature databases. These analyses suggest that inaccurate DNA mismatch repair during repair initiation and excision processes, along with DNA damage and replication errors, are major sources of human germline de novo SNVs. Our findings provide important information for understanding the potential sources of human germline de novo SNVs and the critical role of DNA mismatch repair in their genesis.

Indexed as

Germ-Line MutationAdolescentAdultAge FactorsChildChild, PreschoolDNA Mutational AnalysisFemaleHumansMaleMexican AmericansMiddle AgedPaternal AgePolymorphism, Single NucleotideWhole Genome Sequencing

Identifiers

PMID39506086
PMCPMC11541588

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.