Evidence map›Paper›PMID 39505900›Full record

ArticleNPJ biofilms and microbiomes2024

Microbial diversity and secondary metabolism potential in relation to dark alterations in Paleolithic Lascaux Cave.

Zélia Bontemps, Danis Abrouk, Sita Venier, Pierre Vergne, Serge Michalet, Gilles Comte, Yvan Moënne-Loccoz, Mylène Hugoni

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zélia BontempsUniversité Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR 5557 Ecologie Microbienne, Villeurbanne, France.
Danis AbroukUniversité Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR 5557 Ecologie Microbienne, Villeurbanne, France.
Sita VenierUniversité Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR 5557 Ecologie Microbienne, Villeurbanne, France.
Pierre VergneUniversité Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR 5557 Ecologie Microbienne, Villeurbanne, France.ORCID http://orcid.org/0009-0004-6296-9738
Serge MichaletUniversité Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR 5557 Ecologie Microbienne, Villeurbanne, France.
Gilles ComteUniversité Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR 5557 Ecologie Microbienne, Villeurbanne, France.
Yvan Moënne-LoccozUniversité Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR 5557 Ecologie Microbienne, Villeurbanne, France.
Mylène HugoniInstitut Universitaire de France (IUF), Paris, France. mylene.hugoni@univ-lyon1.fr.ORCID http://orcid.org/0000-0002-2430-1057

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tourism in Paleolithic caves can cause an imbalance in cave microbiota and lead to cave wall alterations, such as dark zones. However, the mechanisms driving dark zone formation remain unclear. Using shotgun metagenomics in Lascaux Cave's Apse and Passage across two years, we tested metabarcoding-derived functional hypotheses regarding microbial diversity and metabolic potential in dark zones vs unmarked surfaces nearby. Taxonomic and functional metagenomic profiles were consistent across years but divergent between cave locations. Aromatic compound degradation genes were prevalent inside and outside dark zones, as expected from past biocide usage. Dark zones exhibited enhanced pigment biosynthesis potential (melanin and carotenoids) and melanin was evidenced chemically, while unmarked surfaces showed genes for antimicrobials production, suggesting that antibiosis might restrict the development of pigmented microorganisms and dark zone extension. Thus, this work revealed key functional microbial traits associated with dark zone formation, which helps understand cave alteration processes under severe anthropization.

Indexed as

BacteriaCavesMetagenomicsMicrobiotaSecondary MetabolismBiodiversityMelaninsMetagenomeMelanins

Identifiers

PMID39505900
PMCPMC11541736

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.