Evidence map›Paper›PMID 39505874›Full record

ArticleScientific reports2024

Computational design and evaluation of a polyvalent vaccine for viral nervous necrosis (VNN) in fish to combat Betanodavirus infection.

Abu Tayab Moin, Nurul Amin Rani, Yasin Arafath Sharker, Tanbir Ahammed, Umme Sadea Rahman, Sadia Yasmin, Irfan Haque Ratul, Shanjida Akter Joyoti, Muhammad Sakib Musa, Mizan Ur Rahaman and 6 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Abu Tayab Moin *Department of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh. tayabmoin786@gmail.com.
Nurul Amin Rani *Faculty of Biotechnology and Genetic Engineering, Sylhet Agricultural University, Sylhet, 3100, Bangladesh.
Yasin Arafath Sharker *Department of Pharmacy, University of Asia Pacific, Dhaka, 1205, Bangladesh.
Tanbir Ahammed *Department of Biotechnology and Bioinformatics, School of Environment and Life Science, Independent University Bangladesh, Dhaka, 1229, Bangladesh.
Umme Sadea RahmanDepartment of Pharmacy, School of Pharmacy and Public Health, Independent University Bangladesh, Dhaka, 1229, Bangladesh.
Sadia YasminDepartment of Biochemistry and Biotechnology, University of Science and Technology Chittagong, Chattogram, 4202, Bangladesh.
Irfan Haque RatulNotre Dame College, Dhaka, 1000, Bangladesh.
Shanjida Akter JoyotiDepartment of Fisheries, Faculty of Marine Sciences and Fisheries, University of Chittagong, Chattogram, 4331, Bangladesh.
Muhammad Sakib MusaDepartment of Applied Chemistry and Chemical Engineering, Faculty of Science, University of Chittagong, Chattogram, 4331, Bangladesh.
Mizan Ur RahamanDepartment of Genetic Engineering and Biotechnology, Shahjalal University of Science and Technology, Sylhet, 3114, Bangladesh.
Dipta BiswasDepartment of Fisheries, Faculty of Marine Sciences and Fisheries, University of Chittagong, Chattogram, 4331, Bangladesh.
Md Hazrat AliDepartment of Genetic Engineering and Biotechnology, Shahjalal University of Science and Technology, Sylhet, 3114, Bangladesh.
S M Murshid Ul AlamDepartment of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh. murshid.geb@cu.ac.bd.
Rajesh B PatilDepartment of Pharmaceutical Chemistry, Sinhgad Technical Education Society's, Sinhgad College of Pharmacy, Pune, 411041, Maharashtra, India. rajesh.patil@sinhgad.edu.
Rashed Un NabiDepartment of Fisheries, Faculty of Marine Sciences and Fisheries, University of Chittagong, Chattogram, 4331, Bangladesh. mrnimscu@yahoo.com.
Mohammad Helal UddinDepartment of Applied Chemistry and Chemical Engineering, Faculty of Science, University of Chittagong, Chattogram, 4331, Bangladesh. mhuddincu@yahoo.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viral nervous necrosis (VNN) poses a significant threat to the aquaculture industry, causing substantial losses and economic burdens. The disease, attributed to nervous necrosis viruses within the Betanodavirus genus, is particularly pervasive in the Mediterranean region, affecting various fish species across all production stages with mortality rates reaching 100%. Developing effective preventive measures against VNN is imperative. In this study, we employed rigorous immunoinformatics techniques to design a novel multi-epitope vaccine targeting VNN. Five RNA-directed RNA polymerases, crucial to the lifecycle of Betanodavirus, were selected as vaccine targets. The antigenicity and favorable physicochemical properties of these proteins were confirmed, and epitope mapping identified cytotoxic T lymphocyte, helper T lymphocyte, and linear B lymphocyte epitopes essential for eliciting a robust immune response. The selected epitopes, characterized by high antigenicity, non-allergenicity, and non-toxicity, were further enhanced by adding PADRE sequences and hBD adjuvants to increase immunogenicity. Two vaccine constructs were developed by linking epitopes using appropriate linkers, demonstrating high antigenicity, solubility, and stability. Molecular dynamics simulations revealed stable interactions between the vaccine constructs and Toll-like receptors (TLRs), essential for pathogen recognition and immune response activation in fish. Notably, vaccine construct V2 exhibited superior stability and binding affinity with TLR8, suggesting its potential as a promising candidate for VNN prevention. Overall, our study presents a comprehensive approach to VNN vaccine design utilizing immunoinformatics, offering safe, immunogenic, and effective solutions across multiple Betanodavirus species. Further experimental validation in model animals is recommended to fully assess the vaccine's efficacy. This research contributes to improved vaccine development against diverse fish pathogens by addressing emerging challenges and individualized immunization requirements in aquaculture.

Indexed as

Fish DiseasesFishesNodaviridaeRNA Virus InfectionsViral VaccinesAnimalsComputational BiologyEpitope MappingEpitopes, B-LymphocyteEpitopes, T-LymphocyteMolecular Dynamics SimulationEpitopes, B-LymphocyteEpitopes, T-LymphocyteViral VaccinesAquacultureBetanodavirusFish vaccineImmunoinformaticsMolecular dynamics simulationMulti-epitope vaccineViral nervous necrosis (VNN)

Identifiers

PMID39505874
PMCPMC11542017

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.