Evidence map›Paper›PMID 39504476›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2025

Evaluating gradient-based explanation methods for neural network ECG analysis using heatmaps.

Andrea Marheim Storås, Steffen Mæland, Jonas L Isaksen, Steven Alexander Hicks, Vajira Thambawita, Claus Graff, Hugo Lewi Hammer, Pål Halvorsen, Michael Alexander Riegler, Jørgen K Kanters

Abstract readEvaluation Study
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Evaluating artificial intelligence-enabled medical tests in cardiology: Best practice.International journal of cardiology. Heart & vasculature · 2025
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Andrea Marheim StoråsDepartment of Holistic Systems, SimulaMet, 0170 Oslo, Norway.ORCID 0000-0002-1038-7080
Steffen MælandDepartment of Computer Science, Electrical Engineering and Mathematical Sciences, Western Norway University of Applied Sciences, 5063 Bergen, Norway.
Jonas L IsaksenLaboratory of Experimental Cardiology, University of Copenhagen, 2200 Copenhagen, Denmark.
Steven Alexander HicksDepartment of Holistic Systems, SimulaMet, 0170 Oslo, Norway.ORCID 0000-0002-3332-1201
Vajira ThambawitaDepartment of Holistic Systems, SimulaMet, 0170 Oslo, Norway.
Claus GraffDepartment of Health Science and Technology, Aalborg University, 9260 Aalborg, Denmark.
Hugo Lewi HammerDepartment of Holistic Systems, SimulaMet, 0170 Oslo, Norway.
Pål HalvorsenDepartment of Holistic Systems, SimulaMet, 0170 Oslo, Norway.
Michael Alexander RieglerDepartment of Holistic Systems, SimulaMet, 0170 Oslo, Norway.ORCID 0000-0002-3153-2064
Jørgen K KantersLaboratory of Experimental Cardiology, University of Copenhagen, 2200 Copenhagen, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveEvaluate popular explanation methods using heatmap visualizations to explain the predictions of deep neural networks for electrocardiogram (ECG) analysis and provide recommendations for selection of explanations methods. MATERIALS AND

methodsA residual deep neural network was trained on ECGs to predict intervals and amplitudes. Nine commonly used explanation methods (Saliency, Deconvolution, Guided backpropagation, Gradient SHAP, SmoothGrad, Input × gradient, DeepLIFT, Integrated gradients, GradCAM) were qualitatively evaluated by medical experts and objectively evaluated using a perturbation-based method.

resultsNo single explanation method consistently outperformed the other methods, but some methods were clearly inferior. We found considerable disagreement between the human expert evaluation and the objective evaluation by perturbation. DISCUSSION: The best explanation method depended on the ECG measure. To ensure that future explanations of deep neural networks for medical data analyses are useful to medical experts, data scientists developing new explanation methods should collaborate tightly with domain experts. Because there is no explanation method that performs best in all use cases, several methods should be applied.

conclusionSeveral explanation methods should be used to determine the most suitable approach.

Indexed as

ElectrocardiographyNeural Networks, ComputerDeep LearningHumansSignal Processing, Computer-Assistedexplainable artificial intelligencemachine learning

Identifiers

PMID39504476
PMCPMC11648713

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.