Evidence map›Paper›PMID 39504374›Full record

ArticleScience advances2024

Substrate specificity and protein stability drive the divergence of plant-specific DNA methyltransferases.

Jianjun Jiang, Jia Gwee, Jian Fang, Sarah M Leichter, Dean Sanders, Xinrui Ji, Jikui Song, Xuehua Zhong

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Features of DNA methylome in Capsicum spp.Epigenetics & chromatin · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Jianjun JiangWisconsin Institute for Discovery and Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0003-3887-2624
Jia GweeWisconsin Institute for Discovery and Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0001-9877-4546
Jian FangDepartment of Biochemistry, University of California, Riverside, CA 92521, USA.ORCID 0000-0002-8652-1768
Sarah M LeichterWisconsin Institute for Discovery and Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0001-7572-3375
Dean SandersWisconsin Institute for Discovery and Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53715, USA.
Xinrui JiDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.ORCID 0000-0002-4414-0043
Jikui SongDepartment of Biochemistry, University of California, Riverside, CA 92521, USA.ORCID 0000-0002-4958-1032
Xuehua ZhongWisconsin Institute for Discovery and Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53715, USA.ORCID 0000-0002-2350-0046

Funding

Mechanistic Insights into Mammalian DNA MethylationR35GM119721 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Jikui Song · 2016 to 2026
$5.3M
Uncovering the epigenetic codes for genome integrity, developmental and environmental interaction.R35GM124806 · NIGMS · WASHINGTON UNIVERSITY · PI XUEHUA ZHONG · 2017 to 2026
$4.2M
NIGMS NIH HHS R35 GM119721NIGMS NIH HHS R35 GM124806
6 · The paper itself

Abstract

DNA methylation is an important epigenetic mechanism essential for transposon silencing and genome integrity. Across evolution, the substrates of DNA methylation have diversified between kingdoms. In plants, chromomethylase3 (CMT3) and CMT2 mediate CHG and CHH methylation, respectively. However, how these two methyltransferases diverge on substrate specificities during evolution remains unknown. Here, we reveal that CMT2 originates from a duplication of an evolutionarily ancient CMT3 in flowering plants. Lacking a key arginine residue recognizing CHG in CMT2 impairs its CHG methylation activity in most flowering plants. An engineered V1200R mutation empowers CMT2 to restore CHG and CHH methylations in

Indexed as

ArabidopsisDNA MethylationArabidopsis ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA-Cytosine MethylasesEvolution, MolecularMutationProtein StabilitySubstrate SpecificityArabidopsis ProteinsCMT3 protein, ArabidopsisDNA (Cytosine-5-)-MethyltransferasesDNA-Cytosine Methylases

Identifiers

PMID39504374
PMCPMC11540031

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.