Evidence map›Paper›PMID 39501901›Full record

ArticleJournal of cell science2025

Decreased DNA density is a better indicator of a nuclear bleb than lamin B loss.

Samantha Bunner, Kelsey Prince, Emily M Pujadas Liwag, Nebiyat Eskndir, Karan Srikrishna, Antonia Amonu McCarthy, Anna Kuklinski, Olivia Jackson, Pedro Pellegrino, Shrushti Jagtap and 17 more

Abstract read
In one paragraph

Article in Journal of cell science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
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  9. Article
  10. How the chromatin landscape influences nuclear morphology.Frontiers in cell and developmental biology · 2025
    Review
  11. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Samantha BunnerBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Kelsey PrinceBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.ORCID 0009-0004-5640-2479
Emily M Pujadas LiwagDepartment of Biomedical Engineering, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0002-3520-835X
Nebiyat EskndirBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Karan SrikrishnaBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Antonia Amonu McCarthyBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Anna KuklinskiBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Olivia JacksonBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Pedro PellegrinoBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Shrushti JagtapBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Imuetiyan EwekaBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Colman LawlorBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Emma EastinBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Griffin YasBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Julianna AielloBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Nathan LaPointeBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Isabelle Schramm von BlucherBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Jillian HardyBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Jason ChenBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Schuyler FigueroaBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Vadim BackmanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0003-1981-1818
Anne JanssenSchool of Biological Sciences, University of Cambridge, Cambridge CB2 1TN, UK.
Mary PackardBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Katherine DorfmanBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Luay AlmassalhaDepartment of Biomedical Engineering, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0001-9355-7681
Michael Seifu BahiruBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.ORCID 0000-0003-1371-2552
Andrew D StephensBiology Department, University of Massachusetts Amherst, Amherst, MA 01003, USA.ORCID 0000-0001-5474-7845

Funding

Technology Development UnitU54CA268084 · NCI · NORTHWESTERN UNIVERSITY · PI Vadim Backman, Daniela E Matei · 2022 to 2026
$10.0M
Studying E-cadherin dynamics during extravasation and metastatic colonizationU54CA261694 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ROGER D KAMM · 2021 to 2026
$9.1M
Reducing Cancer Transcriptional Heterogeneity through Regulation of Chromatin StructureR01CA228272 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2018 to 2022
$3.2M
Role of chromatin mechanics in nuclear shape and integrityR35GM154928 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Andrew Daniel Stephens · 2024 to 2026
$1.2M
Christina Carinato Charitable FoundationFederation of European Biochemical SocietiesNational Science Foundation EFMA-1830961NCI NIH HHS R01 CA228272NCI NIH HHS U54 CA261694NCI NIH HHS U54 CA268084NIGMS NIH HHS R35 GM154928NIH HHS R35GM154928University of Massachusetts Amherst
6 · The paper itself

Abstract

Nuclear blebs are herniations of the nucleus that occur in diseased nuclei and cause nuclear rupture leading to cellular dysfunction. Chromatin and lamins are two of the major structural components of the nucleus that maintain its shape and function, but their relative roles in nuclear blebbing remain elusive. To determine the composition of nuclear blebs, we compared the immunofluorescence intensity of DNA and lamin B in the main nucleus body to that in the nuclear bleb across cell types and perturbations. DNA density in the nuclear bleb was consistently decreased to about half that of the nuclear body whereas lamin B levels in the nuclear bleb varied widely. Partial wave spectroscopic (PWS) microscopy recapitulated the significantly decreased likelihood of high-density domains in the nuclear bleb versus body, and that it was independent of lamin B level. Time-lapse imaging into immunofluorescence revealed that decreased DNA density marked all nuclear blebs whereas decreased lamin B1 levels only occurred in blebs that had recently ruptured. Thus, decreased DNA density is a better marker of a nuclear bleb than lamin B level.

Indexed as

Cell NucleusDNALamin Type BAnimalsHumansDNALamin Type BBlebChromatinDNALamin BNucleus

Identifiers

PMID39501901
PMCPMC11883270

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.