Evidence map›Paper›PMID 39501626›Full record

ArticleJournal of integrative bioinformatics2024

A roadmap for a middleware as a federation service for integrative data retrieval of agricultural data.

Jorge García Brizuela, Carsten Scharfenberg, Carmen Scheuner, Florian Hoedt, Patrick König, Angela Kranz, Antonia Leidel, Daniel Martini, Gabriel Schneider, Julian Schneider and 8 more

Abstract read
In one paragraph

Article in Journal of integrative bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Order from entropy: big data from FAIR data cohorts in the digital age of plant breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Jorge García BrizuelaLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Gatersleben, Germany, https://www.ipk-gatersleben.de/.ORCID https://orcid.org/0000-0003-0527-1339
Carsten ScharfenbergLeibniz Centre for Agricultural Landscape Research (ZALF), D-15374 Müncheberg, Germany, https://www.zalf.de/.ORCID https://orcid.org/0009-0007-8972-6762
Carmen ScheunerSenckenberg Museum of Natural History Görlitz, D-02826 Görlitz, Germany, https://museumgoerlitz.senckenberg.de/.ORCID https://orcid.org/0009-0007-8738-5247
Florian HoedtJohann Heinrich von Thünen-Institut, D-38116 Braunschweig, Germany, https://www.thuenen.de/.ORCID https://orcid.org/0000-0002-6068-1659
Patrick KönigLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Gatersleben, Germany, https://www.ipk-gatersleben.de/.ORCID https://orcid.org/0000-0002-8948-6793
Angela KranzForschungszentrum Jülich GmbH (FZJ), IBG-4, D-52428 Jülich, Germany, https://www.fz-juelich.de/en.ORCID https://orcid.org/0000-0002-8000-0400
Antonia LeidelLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Gatersleben, Germany, https://www.ipk-gatersleben.de/.ORCID https://orcid.org/0009-0007-1765-0527
Daniel MartiniKuratorium für Technik und Bauwesen in der Landwirtschaft (KTBL), D-64289 Darmstadt, Germany, https://www.ktbl.de/.ORCID https://orcid.org/0000-0002-6953-4524
Gabriel SchneiderZB MED - Information Centre for Life Sciences, D-50931 Cologne, Germany, https://www.zbmed.de/.ORCID https://orcid.org/0000-0001-6573-3115
Julian SchneiderZB MED - Information Centre for Life Sciences, D-50931 Cologne, Germany, https://www.zbmed.de/.ORCID https://orcid.org/0000-0002-3322-8672
Lea Sophie SingsonLeibniz-institute for Information Infrastructure (FIZ Karlsruhe), D-76344 Karlsruhe, Germany, https://www.fiz-karlsruhe.de/.ORCID https://orcid.org/0009-0004-9978-8703
Harald von WaldowJohann Heinrich von Thünen-Institut, D-38116 Braunschweig, Germany, https://www.thuenen.de/.ORCID https://orcid.org/0000-0003-4800-2833
Nils WehrmeyerForschungszentrum Jülich GmbH (FZJ), IBG-4, D-52428 Jülich, Germany, https://www.fz-juelich.de/en.ORCID https://orcid.org/0009-0009-7337-3012
Björn UsadelForschungszentrum Jülich GmbH (FZJ), IBG-4, D-52428 Jülich, Germany, https://www.fz-juelich.de/en.ORCID https://orcid.org/0000-0003-0921-8041
Stephan LeschSenckenberg Museum of Natural History Görlitz, D-02826 Görlitz, Germany, https://museumgoerlitz.senckenberg.de/.ORCID https://orcid.org/0000-0002-4324-3868
Xenia SpeckaLeibniz Centre for Agricultural Landscape Research (ZALF), D-15374 Müncheberg, Germany, https://www.zalf.de/.ORCID https://orcid.org/0000-0002-1890-0192
Matthias LangeLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Gatersleben, Germany, https://www.ipk-gatersleben.de/.ORCID https://orcid.org/0000-0002-4316-078X
Daniel ArendLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), D-06466 Gatersleben, Germany, https://www.ipk-gatersleben.de/.ORCID https://orcid.org/0000-0002-2455-5938

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agriculture is confronted with several challenges such as climate change, the loss of biodiversity and stagnating productivity. The massive increasing amount of data and new digital technologies promise to overcome them, but they necessitate careful data integration and data management to make them usable. The FAIRagro consortium is part of the National Research Data Infrastructure (NFDI) in Germany and will develop FAIR compliant infrastructure services for the agrosystems science community, which will be integrated in the existing research data infrastructure service landscape. Here we present the initial steps of designing and implementing the FAIRagro middleware infrastructure to connect existing data infrastructures. The middleware will feature services for the seamless data integration across diverse infrastructures. Data and metadata are streamlined for research in agrosystems science by downstream processing in the central FAIRagro Search and Inventory Portal and the data integration and analysis workflow system "SciWIn".

Indexed as

AgricultureGermanyInformation Storage and RetrievalSoftwareFAIRagrofederate research data infrastructuresmiddlewareNFDI

Identifiers

PMID39501626
PMCPMC11602230

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.