Evidence map›Paper›PMID 39499629›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Genomic perspectives on foodborne illness.

David J Lipman, Joshua L Cherry, Errol Strain, Richa Agarwala, Steven M Musser

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Genomic epidemiology ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. A two-year study ofApplied and environmental microbiology · 2025
    Article
  3. Article
  4. Genomic Surveillance of Foodborne Pathogens: Advances and Obstacles.Journal of public health management and practice : JPHMP
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

David J LipmanFood and Drug Administration, Center for Food Safety and Applied Nutrition, Office of Regulatory Science, College Park, MD 20740.
Joshua L CherryNational Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD 20892.ORCID 0000-0002-4076-1862
Errol StrainFood and Drug Administration, Center for Food Safety and Applied Nutrition, Office of Regulatory Science, College Park, MD 20740.
Richa AgarwalaNational Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD 20892.
Steven M MusserFood and Drug Administration, Center for Food Safety and Applied Nutrition, Office of Regulatory Science, College Park, MD 20740.ORCID 0000-0002-4259-7699

Funding

HHS | FDA | Center for Food Safety and Applied Nutrition (CFSAN) intramuralHHS | National Institutes of Health (NIH) intramural
6 · The paper itself

Abstract

Whole-genome sequencing of bacterial pathogens is used by public health agencies to link cases of food poisoning caused by the same source of contamination. The vast majority of these appear to be sporadic cases associated with small contamination episodes and do not trigger investigations. A "contamination episode" refers to one or more contamination events from a single source over a period of time. We examine clusters of sequenced clinical isolates of

Indexed as

Foodborne DiseasesCampylobacterChild, PreschoolEscherichia coliFood ContaminationFood MicrobiologyGenome, BacterialGenomicsHumansInfantListeriaPolymorphism, Single NucleotideSalmonellaWhole Genome Sequencingbacterial pathogensfood safetywhole genome sequencing

Identifiers

PMID39499629
PMCPMC11573619

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.