Evidence map›Paper›PMID 39497268›Full record

ArticleBiotechnology and bioengineering2025

Oxygen Consumption in Filamentous Pellets of Aspergillus niger: Microelectrode Measurements and Modeling.

Charlotte Deffur, Anna Dinius, Julian Pagel, Henri Müller, Stefan Schmideder, Heiko Briesen, Rainer Krull

Abstract read
In one paragraph

Article in Biotechnology and bioengineering, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Charlotte DeffurSchool of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany.ORCID 0000-0002-3902-0602
Anna DiniusInstitute of Biochemical Engineering, Technische Universität Braunschweig, Braunschweig, Germany.ORCID 0000-0002-3562-7925
Julian PagelInstitute of Biochemical Engineering, Technische Universität Braunschweig, Braunschweig, Germany.ORCID 0009-0001-4932-1812
Henri MüllerSchool of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany.ORCID 0000-0002-4831-0003
Stefan SchmidederSchool of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany.ORCID 0000-0003-4328-9724
Heiko BriesenSchool of Life Sciences Weihenstephan, Chair of Process Systems Engineering, Technical University of Munich, Freising, Germany.ORCID 0000-0001-7725-5907
Rainer KrullInstitute of Biochemical Engineering, Technische Universität Braunschweig, Braunschweig, Germany.ORCID 0000-0003-2821-8610

Funding

The authors thank the Deutsche Forschungsgemeinschaft for financial support for this study within the SPP 1934 DiSPBiotech (315384307 and 315305620) and SPP2170 InterZell (427889137).
6 · The paper itself

Abstract

Filamentous fungi cultivated as biopellets are well established in biotechnology industries. A distinctive feature of filamentous fungi is that hyphal growth and fungal morphology affect product titers and require tailored process conditions. Within the pellet, mass transfer, substrate consumption, and biomass formation are intricately linked to the local hyphal fraction and pellet size. This study combined oxygen concentration measurements with microelectrode profiling and three-dimensional X-ray microtomography measurements of the same fungal pellets for the first time. This allowed for the precise correlation of micromorphological information with local oxygen concentrations of two Aspergillus niger strains (hyperbranching and regular branching). The generated results showed that the identified oxygen-penetrated outer pellet regions exhibited a depth of 90-290 µm, strain-specific, with the active part percentage in the pellet ranging from 18% to 69%, without any difference between strains. Using a 1D continuum diffusion consumption model, the oxygen concentration in the pellets was computed depending on the local hyphal fraction. The best simulation results were achieved by individually estimating the oxygen-related biomass yield coefficient of the consumption term within each examined pellet, with an average estimated value of 1.95 (± 0.72) kg biomass per kg oxygen. The study lays the foundation for understanding oxygen supply in fungal pellets and optimizing processes and pellet morphologies accordingly.

Indexed as

Aspergillus nigerMicroelectrodesOxygenBiomassModels, BiologicalOxygen ConsumptionX-Ray MicrotomographyOxygen3D image analysisactive part percentagemicroelectrode techniquemorphologyoxygen consumptionparameter estimationX‐ray microcomputed tomography

Identifiers

PMID39497268
PMCPMC11718433

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.