Evidence map›Paper›PMID 39497218›Full record

ArticleHuman genomics2024

Drosophila Toxicogenomics: genetic variation and sexual dimorphism in susceptibility to 4-Methylimidazole.

Katelynne M Collins, Elisabeth Howansky, Sarah C Macon-Foley, Maria E Adonay, Vijay Shankar, Richard F Lyman, Nestor Octavio Nazario-Yepiz, Jordyn K Brooks, Rachel A Lyman, Trudy F C Mackay and 1 more

Abstract read
In one paragraph

Article in Human genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Arsenic toxicity in theFrontiers in toxicology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Katelynne M Collins *Center for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Elisabeth Howansky *Center for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Sarah C Macon-FoleyCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Maria E AdonayCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Vijay ShankarCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Richard F LymanCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Nestor Octavio Nazario-YepizCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Jordyn K BrooksCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Rachel A LymanCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA.
Trudy F C MackayCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA. tmackay@clemson.edu.
Robert R H AnholtCenter for Human Genetics, Department of Genetics and Biochemistry, Clemson University, Greenwood, SC, 29646, USA. ranholt@clemson.edu.

Funding

Statistical Methods for Gene Regulatory Analysis From Single Cell Genomics DataP20GM139769 · NIGMS · CLEMSON UNIVERSITY · PI ANHOLT, ROBERT R. H, ARNO, GAVIN · 2021 to 2025
$10.8M
European Union's Horizon 2020 Research and Innovation program 965406NIGMS NIH HHS P20 GM139769NIH HHS P20GM139769
6 · The paper itself

Abstract

background4-methylimidazole is a ubiquitous and potentially carcinogenic environmental toxicant. Genetic factors that contribute to variation in susceptibility to its toxic effects are challenging to assess in human populations. We used the Drosophila melanogaster Genetic Reference Panel (DGRP), a living library of natural genetic variation, to identify genes with human orthologs associated with variation in susceptibility to 4-methylimidazole.

resultsWe screened 204 DGRP lines for survival following 24-hour exposure to 4-methylimidazole. We found extensive genetic variation for survival, with a broad sense heritability of 0.82; as well as genetic variation in sexual dimorphism, with a cross-sex genetic correlation of 0.59. Genome-wide association analyses identified a total of 241 candidate molecular polymorphisms in or near 273 unique genes associated with survival. These polymorphisms had either sex-specific or sex-antagonistic effects, and most had putative regulatory effects. We generated interaction networks using these candidate genes as inputs and computationally recruited genes with known physical or genetic interactions. The network genes were significantly over-represented for gene ontology terms involving all aspects of development (including nervous system development) and cellular and organismal functions as well as canonical signaling pathways, and most had human orthologs.

conclusionsThe genetic basis of variation in sensitivity to acute exposure to 4-methylimidazole in Drosophila is attributable to variation in genes and networks of genes known for their effects on multiple developmental and cellular processes, including possible neurotoxicity. Given evolutionary conservation of the underlying genes and pathways, these insights may be applicable to humans.

Indexed as

Drosophila melanogasterGenetic VariationGenome-Wide Association StudyImidazolesSex CharacteristicsToxicogeneticsAnimalsFemaleGene Regulatory NetworksHumansMaleImidazolesDrosophila Genetic Reference Panelgenome wide association analysesnetwork associations with complex traitsQuantitative geneticssex-specific effectssexually antagonistic effects

Identifiers

PMID39497218
PMCPMC11533318

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.