Evidence map›Paper›PMID 39496954›Full record

ArticleNature immunology2024

Novel coenzyme Q6 genetic variant increases susceptibility to pneumococcal disease.

Emma C Walker, Sarah Javati, Elizabeth M Todd, John-Paul Matlam, Xue Lin, Michelle Bryant, Emily Krone, Rashmi Ramani, Pallavi Chandra, Taylor P Green and 20 more

Abstract read
In one paragraph

Article in Nature immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Emma C WalkerDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Sarah JavatiInfection and Immunity Unit, Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.ORCID http://orcid.org/0009-0006-6512-0670
Elizabeth M ToddDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
John-Paul MatlamInfection and Immunity Unit, Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.
Xue LinDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Michelle BryantDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Emily KroneDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Rashmi RamaniDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Pallavi ChandraDepartment of Medicine, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Taylor P GreenDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Edgar P AnayaDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Julie Y ZhouDepartment of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.
Katherine A AlexanderDepartment of Pediatrics, Division of Hematology-Oncology, Washington University School of Medicine, St. Louis, MO, USA.
R Spencer TongDepartment of Pediatrics, Division of Hematology-Oncology, Washington University School of Medicine, St. Louis, MO, USA.
Lapule YuasiInfection and Immunity Unit, Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.
Sebastian BoluarteDepartment. of Pediatrics, Division of Critical Care Medicine, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0001-8270-8982
Fan YangDepartment. of Pediatrics, Division of Critical Care Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Lina GreenbergDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.
Jeanne M NerbonneDepartments of Developmental Biology and Medicine, Cardiovascular Division, Washington University School of Medicine, St. Louis, MO, USA.
Michael J GreenbergDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0003-1320-3547
Regina A ClemensDepartment. of Pediatrics, Division of Critical Care Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Jennifer A PhilipsDepartment of Medicine, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-9476-0240
Leslie D WilsonDivision of Comparative Medicine, Research Animal Diagnostic Laboratory, Washington University School of Medicine, St. Louis, MO, USA.
Carmen M HalabiDepartment of Pediatrics, Division of Nephrology and Department of Cell Biology and Physiology, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0003-4889-8131
Brian J DeBoschDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Washington University School of Medicine, St. Louis, MO, USA.
Christopher C BlythWesfarmers Centre for Vaccines and Infectious Diseases, Telethon Kids Institute and School of Medicine, University of Western Australia, Nedlands, Western Australia, Australia.
Todd E DruleyDepartment of Pediatrics, Division of Hematology-Oncology, Washington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-3245-7561
James W KazuraCenter for Global Health & Diseases, School of Medicine, Case Western Reserve University, Cleveland, OH, USA.
William S Pomat *Infection and Immunity Unit, Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.
Sharon Celeste Morley *Department of Pediatrics, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA. morleys@wustl.edu.ORCID http://orcid.org/0000-0001-8424-0121

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
WU P&FP30DK020579 · NIDDK · WASHINGTON UNIVERSITY · PI Clay F. Semenkovich · 2013 to 2026
$27.1M
Infectious Diseases/Basic Microbial Pathogenic MechanismsT32AI007172 · NIAID · WASHINGTON UNIVERSITY · PI Daniel E. Goldberg, JENNIFER A PHILIPS · 1985 to 2026
$13.0M
Strength of TCR:self-pMHC interactions in the periphery instructs CD4+ T help cell responsesR01AI139540 · NIAID · WASHINGTON UNIVERSITY · PI MORLEY, SHARON CELESTE · 2019 to 2023
$2.3M
Novel coenzyme Q6 variant reveals non-immune determinants of survival during pneumococcal sepsisR01HL177453 · NHLBI · WASHINGTON UNIVERSITY · PI Sharon Celeste Morley · 2024 to 2026
$2.2M
T CELL IMMUNITY TO PREERYTHROCYTIC P FALCIPARUMR01AI036478 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KAZURA, JAMES WALTER · 1997 to 2006
$2.0M
Membrane potential and Calcium Signaling in Neutrophil Development and InflammationR01AI166793 · NIAID · WASHINGTON UNIVERSITY · PI Regina Clemens · 2022 to 2026
$1.9M
HUMAN VARIANT IN CoQ BIOSYNTHESIS IMPAIRS LUNG IMMUNITY IN ACUTE PNEUMONIAR21AI142723 · NIAID · WASHINGTON UNIVERSITY · PI MORLEY, SHARON CELESTE · 2019 to 2020
$430k
Internalization of dead cells governs intestinal stem cell activityF32DK136180 · NIDDK · CLEVELAND CLINIC LERNER COM-CWRU · PI Julie Y. Zhou · 2024 to 2026
$220k
Children's Discovery Institute (CDI) PD-II-2013-295Children's Discovery Institute (CDI) PD-II-2014-366Children's Discovery Institute (CDI) PD-II-2018-742NCATS NIH HHS UL1 TR000448NCI NIH HHS P30 CA091842NHLBI NIH HHS R01 HL177453NIAID NIH HHS R01 AI036478NIAID NIH HHS R01 AI139540NIAID NIH HHS R01 AI166793NIAID NIH HHS R21 AI142723NIAID NIH HHS T32 AI007172NIDDK NIH HHS F32 DK136180NIDDK NIH HHS P30 DK020579
6 · The paper itself

Abstract

Acute lower respiratory tract infection (ALRI) remains a major worldwide cause of childhood mortality, compelling innovation in prevention and treatment. Children in Papua New Guinea (PNG) experience profound morbidity from ALRI caused by Streptococcus pneumoniae. As a result of evolutionary divergence, the human PNG population exhibits profound genetic variation and diversity. To address unmet health needs of children in PNG, we tested whether genetic variants increased ALRI morbidity. Whole-exome sequencing of a pilot child cohort identified homozygosity for a novel single-nucleotide variant (SNV) in coenzyme Q6 (COQ6) in cases with ALRI. COQ6 encodes a mitochondrial enzyme essential for biosynthesis of ubiquinone, an electron acceptor in the electron transport chain. A significant association of SNV homozygosity with ALRI was replicated in an independent ALRI cohort (P = 0.036). Mice homozygous for homologous mouse variant Coq6 exhibited increased mortality after pneumococcal lung infection, confirming causality. Bone marrow chimeric mice further revealed that expression of variant Coq6 in recipient (that is, nonhematopoietic) tissues conferred increased mortality. Variant Coq6 maintained ubiquinone biosynthesis, while accelerating metabolic remodeling after pneumococcal challenge. Identification of this COQ6 variant provides a genetic basis for increased pneumonia susceptibility in PNG and establishes a previously unrecognized role for the enzyme COQ6 in regulating inflammatory-mediated metabolic remodeling.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationPneumococcal InfectionsRespiratory Tract InfectionsUbiquinoneAdultAnimalsCells, CulturedChild, PreschoolExome SequencingFemaleHomozygoteHumansInfantMaleMiceUbiquinoneubiquinone 6

Identifiers

PMID39496954
PMCPMC11908386

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.