Evidence map›Paper›PMID 39496815›Full record

ArticleNature chemical biology2025

Engineering a xylose fermenting yeast for lignocellulosic ethanol production.

Yi-Wen Zhang, Jun-Jie Yang, Feng-Hui Qian, Kate Brandon Sutton, Carsten Hjort, Wen-Ping Wu, Yu Jiang, Sheng Yang

Abstract read
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In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Engineering ethanologenic bacteriumSynthetic and systems biotechnology · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Mechanistic elucidation ofFood chemistry: X · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. The role of fatty acid metabolism on B cells and B cell-related autoimmune diseases.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2025
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yi-Wen Zhang *Key Laboratory of Synthetic Biology, Center for Excellence of Molecular Plant Science, Chinese Academy of Sciences, Shanghai, China.
Jun-Jie Yang *Key Laboratory of Synthetic Biology, Center for Excellence of Molecular Plant Science, Chinese Academy of Sciences, Shanghai, China.
Feng-Hui QianShanghai Research and Development Center of Industrial Biotechnology, Shanghai, China.
Kate Brandon SuttonNovozymes North America Inc., Durham, NC, USA.ORCID 0000-0003-4712-6367
Carsten HjortNovozymes A/S, Bagsvaerd, Denmark.
Wen-Ping WuNovozymes China Investment Co. Ltd, Beijing, China.
Yu JiangShanghai Research and Development Center of Industrial Biotechnology, Shanghai, China.ORCID 0000-0002-2943-9960
Sheng YangKey Laboratory of Synthetic Biology, Center for Excellence of Molecular Plant Science, Chinese Academy of Sciences, Shanghai, China. syang@sibs.ac.cn.ORCID 0000-0003-3742-9989

Funding

National Natural Science Foundation of China (National Science Foundation of China) 21825804
6 · The paper itself

Abstract

Lignocellulosic ethanol is produced by yeast fermentation of lignocellulosic hydrolysates generated by chemical pretreatment and enzymatic hydrolysis of plant cell walls. The conversion of xylose into ethanol in hydrolysates containing microbial inhibitors is a major bottleneck in biofuel production. We identified sodium salts as the primary yeast inhibitors, and evolved a Saccharomyces cerevisiae strain overexpressing xylose catabolism genes in xylose or glucose-mixed medium containing sodium salts. The fully evolved yeast strain can efficiently convert xylose in the hydrolysates to ethanol on an industrial scale. We elucidated that the amplification of xylA, XKS1 and pentose phosphate pathway-related genes TAL1, RPE1, TKL1, RKI1, along with mutations in NFS1, TRK1, SSK1, PUF2 and IRA1, are responsible and sufficient for the effective xylose utilization in corn stover hydrolysates containing high sodium salts. Our evolved or reverse-engineered yeast strains enable industrial-scale production of lignocellulosic ethanol and the genetic foundation we uncovered can also facilitate transfer of the phenotype to yeast cell factories producing chemicals beyond ethanol.

Indexed as

EthanolLigninMetabolic EngineeringSaccharomyces cerevisiaeXyloseFermentationSaccharomyces cerevisiae ProteinsEthanolLigninlignocelluloseSaccharomyces cerevisiae ProteinsXylose

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.