ArticleNature communications2024
Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota.
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Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.
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7 citing papers in PubMed.
- Engineering and Application of a Thermostable MHETase for PET Depolymerization.ACS sustainable chemistry & engineering · 2026Article
- Soil management strategies shape bacterial and eukaryotic community structure in organic and inorganic systems of Malus × domestica production.Scientific reports · 2026Article
- Branched-chain amino acid specialization drove diversification within Calditenuaceae (Caldarchaeia) and enables their cultivation.Nature communications · 2026Article
- Ecological distribution and environmental preference of the deep-branching archaeal lineage in high-temperature hot springs of Central Kyushu, Japan.Extremophiles : life under extreme conditions · 2025Article
- Characterization of the thermophilic xylanase Fsa02490Xyn from the hyperthermophile Fervidibacter sacchari belonging to glycoside hydrolase family 10.FEBS open bio · 2025Article
- Discovery and cultivation of prokaryotic taxa in the age of metagenomics and artificial intelligence.The ISME journal · 2025Article
- Genome-streamlined SAR202 bacteria are widely present and active in the euphotic ocean.The ISME journal · 2025Article
Corrections and comments
- Erratum issued
Authors and funding
43 authors.
Nancy O NouSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.ORCID 0000-0003-4758-8131
Jonathan K CovingtonSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.
Dengxun LaiSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.ORCID 0000-0001-8761-7844
Xavier MayaliPhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.ORCID 0000-0002-2170-0773
Cale O SeymourSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.
Juliet JohnstonPhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.
Jian-Yu JiaoState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory, Sun Yat-Sen University, Zhuhai, PR China.
Steffen BuesseckerDepartment of Earth System Science, Stanford University, Stanford, CA, USA.ORCID 0000-0002-1376-8049
Damon MosierDepartment of Biology, California State University, San Bernardino, CA, USA.
Alise R MuokDepartment of Microbial Sciences, Institute of Biology, Leiden University, Sylviusweg 72, Leiden, The Netherlands.
Nicole TorosianSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.
Allison M CookSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.
Ariane BriegelDepartment of Microbial Sciences, Institute of Biology, Leiden University, Sylviusweg 72, Leiden, The Netherlands.ORCID 0000-0003-3733-3725
Tanja WoykeDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-9485-5637
Emiley Eloe-FadroshDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-8162-1276
Nicole ShapiroDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-5405-7761
Scott G BryanSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.
Savannah SleezerSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.
Joshua DimapilisDepartment of Biology, California State University, San Bernardino, CA, USA.
Cristina GonzalezDepartment of Biology, California State University, San Bernardino, CA, USA.
Lizett GonzalezDepartment of Biology, California State University, San Bernardino, CA, USA.
Marlene NoriegaDepartment of Biology, California State University, San Bernardino, CA, USA.
Matthias HessDepartment of Animal Science, University of California Davis, Davis, CA, USA.ORCID 0000-0003-0321-0380
Ross P CarlsonChemical and Biological Engineering, Montana State University, Bozeman, MT, USA.ORCID 0000-0002-2464-7111
Lan LiuState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory, Sun Yat-Sen University, Zhuhai, PR China.ORCID 0000-0001-8139-7246
Meng-Meng LiState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory, Sun Yat-Sen University, Zhuhai, PR China.
Zheng-Han LianState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory, Sun Yat-Sen University, Zhuhai, PR China.
Siqi ZhuCAS Key Laboratory of Tropical Marine Bio Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, PR China.
Fan LiuCAS Key Laboratory of Tropical Marine Bio Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, PR China.
Xian SunCAS Key Laboratory of Tropical Marine Bio Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, PR China.
Beile GaoCAS Key Laboratory of Tropical Marine Bio Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, PR China.
Ritesh MewalalDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-0153-2434
Miranda Harmon-SmithDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-3980-1820
Ian K BlabyDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID 0000-0002-1631-3154
Jan-Fang ChengDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Peter K WeberPhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.ORCID 0000-0001-6022-6050
Gabriela GrigoreanProteomics Core, University of California Davis, Davis, CA, USA.ORCID 0000-0001-5693-0846
Wen-Jun LiState Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory, Sun Yat-Sen University, Zhuhai, PR China.ORCID 0000-0002-1233-736X
Anne E DekasDepartment of Earth System Science, Stanford University, Stanford, CA, USA.ORCID 0000-0001-9548-8413
Jennifer Pett-RidgePhysical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA.ORCID 0000-0002-4439-2398
Jeremy A DodsworthDepartment of Biology, California State University, San Bernardino, CA, USA.
Marike PalmerSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA. marike.palmer@umanitoba.ca.ORCID 0000-0001-8395-8465
Brian P HedlundSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA. brian.hedlund@unlv.edu.ORCID 0000-0001-8530-0448
Funding
Outreach/Diversity/Pipeline ProjectP20GM103440 · NIGMS · UNIVERSITY OF NEVADA RENO · PI Julia Petereit · 2012 to 2026
$58.0MTracking and EvaluationU54GM104944 · NIGMS · UNIVERSITY OF NEVADA LAS VEGAS · PI MARCHAND, GWEN · 2013 to 2023
$39.6MNational Aeronautics and Space Administration (NASA) 80NNSC17KO548National Aeronautics and Space Administration (NASA) 80NSSC19M0150National Natural Science Foundation of China (National Science Foundation of China) 91951205National Science Foundation (NSF) DEB 1557042National Science Foundation (NSF) EAR-1820658Nevada Space Grant Consortium (Nevada NASA Space Grant Consortium) 80NSSC20M0043NIGMS NIH HHS P20 GM103440NIGMS NIH HHS U54 GM104944U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM103440
Abstract
Few aerobic hyperthermophilic microorganisms degrade polysaccharides. Here, we describe the genome-enabled enrichment and optical tweezer-based isolation of an aerobic polysaccharide-degrading hyperthermophile, Fervidibacter sacchari, previously ascribed to candidate phylum Fervidibacteria. F. sacchari uses polysaccharides and monosaccharides for growth at 65-87.5 °C and expresses 191 carbohydrate-active enzymes (CAZymes) according to RNA-Seq and proteomics, including 31 with unusual glycoside hydrolase domains (GH109, GH177, GH179). Fluorescence in-situ hybridization and nanoscale secondary ion mass spectrometry confirmed rapid assimilation of
Indexed as
Genome, BacterialGlycoside HydrolasesPolysaccharidesAerobiosisBacteriaBacterial ProteinsCarbohydrate MetabolismHot SpringsPhylogenyProteomicsBacterial ProteinsGlycoside HydrolasesPolysaccharides
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