Evidence map›Paper›PMID 39496584›Full record

ArticleNature communications2024

PTPRK regulates glycolysis and de novo lipogenesis to promote hepatocyte metabolic reprogramming in obesity.

Eduardo H Gilglioni, Ao Li, Wadsen St-Pierre-Wijckmans, Tzu-Keng Shen, Israel Pérez-Chávez, Garnik Hovhannisyan, Michela Lisjak, Javier Negueruela, Valerie Vandenbempt, Julia Bauzá-Martinez and 18 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
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  4. Review
  5. Article
  6. FASN-mediated metabolic reprogramming drives CD4Arthritis research & therapy · 2026
    Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Eduardo H GilglioniSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.ORCID 0000-0001-5137-4051
Ao LiSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Wadsen St-Pierre-WijckmansSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.ORCID 0009-0005-1080-6117
Tzu-Keng ShenSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Israel Pérez-ChávezSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Garnik HovhannisyanSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Michela LisjakSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Javier NegueruelaSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.ORCID 0000-0001-7967-5067
Valerie VandenbemptSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Julia Bauzá-MartinezBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH, Utrecht, The Netherlands.ORCID 0000-0002-5865-5830
Jose M HerranzHepatology Program, CIMA, University of Navarra, 31009, Pamplona, Spain.
Daria EzeriņaVIB-VUB Center for Structural Biology, Vlaams Instituut voor Biotechnologie, B-1050, Brussels, Belgium.
Stéphane DemineSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Zheng FengSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.ORCID 0000-0002-1829-6183
Thibaut VignaneLeibniz Institute for Analytical Sciences, ISAS e.V., 44139, Dortmund, Germany.ORCID 0000-0002-3377-3187
Lukas Otero SanchezDepartment of Gastroenterology, Hepatopancreatology and Digestive Oncology, Hôpital Universitaire de Bruxelles, B-1070, Brussels, Belgium.
Flavia LambertucciSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Alena PrašnickáSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium.
Jacques DevièreDepartment of Gastroenterology, Hepatopancreatology and Digestive Oncology, Hôpital Universitaire de Bruxelles, B-1070, Brussels, Belgium.
David C HayCentre for Regenerative Medicine, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, EH16 4UU, UK.
Jose A EncinarInstituto de Investigación, Desarrollo e Innovación en Biotecnología Sanitaria de Elche (IDIBE), 03202, Elche, Spain.ORCID 0000-0002-7219-3863
Sumeet Pal SinghIRIBHM, Université libre de Bruxelles, B-1070, Brussels, Belgium.ORCID 0000-0002-5154-3318
Joris MessensVIB-VUB Center for Structural Biology, Vlaams Instituut voor Biotechnologie, B-1050, Brussels, Belgium.ORCID 0000-0002-2128-8264
Milos R FilipovicLeibniz Institute for Analytical Sciences, ISAS e.V., 44139, Dortmund, Germany.
Hayley J SharpeSignalling Programme, Babraham Institute, Cambridge, CB22 3AT, UK.ORCID 0000-0002-4723-298X
Eric TrépoDepartment of Gastroenterology, Hepatopancreatology and Digestive Oncology, Hôpital Universitaire de Bruxelles, B-1070, Brussels, Belgium.
Wei WuBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH, Utrecht, The Netherlands.ORCID 0000-0002-1092-603X
Esteban N GurzovSignal Transduction and Metabolism Laboratory, Université libre de Bruxelles, B-1070, Brussels, Belgium. esteban.gurzov@ulb.be.ORCID 0000-0003-4642-0273

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) GA817940EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) GA864921Generalitat Valenciana (Regional Government of Valencia) PROMETEO/2021/059Wellcome Trust
6 · The paper itself

Abstract

Fat accumulation, de novo lipogenesis, and glycolysis are key drivers of hepatocyte reprogramming and the consequent metabolic dysfunction-associated steatotic liver disease (MASLD). Here we report that obesity leads to dysregulated expression of hepatic protein-tyrosine phosphatases (PTPs). PTPRK was found to be increased in steatotic hepatocytes in both humans and mice, and correlates positively with PPARγ-induced lipogenic signaling. High-fat-fed PTPRK knockout male and female mice have lower weight gain and reduced hepatic fat accumulation. Phosphoproteomic analysis in primary hepatocytes and hepatic metabolomics identified fructose-1,6-bisphosphatase 1 and glycolysis as PTPRK targets in metabolic reprogramming. Mechanistically, PTPRK-induced glycolysis enhances PPARγ and lipogenesis in hepatocytes. Silencing PTPRK in liver cancer cell lines reduces colony-forming capacity and high-fat-fed PTPRK knockout mice exposed to a hepatic carcinogen develop smaller tumours. Our study defines the role of PTPRK in the regulation of hepatic glycolysis, lipid metabolism, and tumour development in obesity.

Indexed as

GlycolysisHepatocytesLipogenesisMice, KnockoutObesityReceptor-Like Protein Tyrosine Phosphatases, Class 2AnimalsDiet, High-FatFatty LiverFemaleHumansLipid MetabolismLiverLiver NeoplasmsMaleMetabolic ReprogrammingPPAR gammaPTPRK protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 2

Identifiers

PMID39496584
PMCPMC11535053

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.