Evidence map›Paper›PMID 39495672›Full record

ArticleThe Plant cell2024

ALTERED MERISTEM PROGRAM1 impairs RNA silencing by repressing the biogenesis of a subset of inverted repeat-derived siRNAs.

Jing Li, Brandon Le, Xufeng Wang, Ye Xu, Suikang Wang, Hao Li, Lei Gao, Beixin Mo, Lin Liu, Xuemei Chen

Abstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jing LiGuangdong Provincial Key Laboratory for Plant Epigenetics, Longhua Bioindustry and Innovation Research Institute, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong 518060, China.ORCID 0000-0002-0924-2204
Brandon LeDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA.ORCID 0000-0001-8651-2186
Xufeng WangBeijing Advanced Center of RNA Biology (BEACON), State Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China.ORCID 0000-0001-9345-827X
Ye XuDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA.ORCID 0000-0002-2512-5171
Suikang WangGuangdong Provincial Key Laboratory for Plant Epigenetics, Longhua Bioindustry and Innovation Research Institute, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong 518060, China.ORCID 0000-0003-3960-1746
Hao LiBeijing Advanced Center of RNA Biology (BEACON), State Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China.
Lei GaoGuangdong Provincial Key Laboratory for Plant Epigenetics, Longhua Bioindustry and Innovation Research Institute, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong 518060, China.ORCID 0000-0002-6488-0292
Beixin MoGuangdong Provincial Key Laboratory for Plant Epigenetics, Longhua Bioindustry and Innovation Research Institute, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong 518060, China.ORCID 0000-0001-7279-9788
Lin LiuGuangdong Provincial Key Laboratory for Plant Epigenetics, Longhua Bioindustry and Innovation Research Institute, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong 518060, China.ORCID 0000-0003-0023-7975
Xuemei ChenBeijing Advanced Center of RNA Biology (BEACON), State Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China.ORCID 0000-0002-5209-1157

Funding

Beijing Advanced Center of RNA Biology (BEACON), State Key Laboratory for Protein and Plant Gene Research, Peking-Tsinghua Joint Center for Life Sciences, Shenzhen Basic Research General Project JCYJ20220531101618038National Key Research and Development Program of China 2019YFA0903900National Natural Science Foundation of China 32270878Research Fund from Synthetic Biology Research Center of Shenzhen UniversityResearch Team Cultivation Program of Shenzhen University 2023DFT005
6 · The paper itself

Abstract

RNA silencing negatively regulates gene expression at the transcriptional and posttranscriptional levels through DNA methylation, histone modification, mRNA cleavage, and translational inhibition. Small interfering RNAs (siRNAs) of 21 to 24 nucleotides are processed from double-stranded RNAs by Dicer-like (DCL) enzymes and play essential roles in RNA silencing in plants. Here, we demonstrated that ALTERED MERISTEM PROGRAM1 (AMP1) and its putative paralog LIKE AMP1 (LAMP1) impair RNA silencing by repressing the biogenesis of a subset of inverted repeat (IR)-derived siRNAs in Arabidopsis (Arabidopsis thaliana). AMP1 and LAMP1 inhibit Pol II-dependent IR gene transcription by suppressing ARGONAUTE 1 (AGO1) protein levels. Genetic analysis indicates that AMP1 acts upstream of RNA polymerase IV subunit 1 (NRPD1), RNA-dependent RNA polymerase 2 (RDR2), and DCL4, which are required for IR-induced RNA silencing. We also show that AMP1 and LAMP1 inhibit siRNA-mediated silencing in a different mechanism from that of AGO4 and DCL3. Together, these results reveal two previously unknown players in siRNA biogenesis from IRs-AGO1, which promotes IR transcription, and AMP1, which inhibits IR transcription indirectly through the repression of AGO1 expression.

Indexed as

ArabidopsisArabidopsis ProteinsArgonaute ProteinsGene Expression Regulation, PlantRNA InterferenceRNA, Small InterferingDNA-Directed RNA PolymerasesInverted Repeat SequencesRibonuclease IIIRNA-Dependent RNA PolymeraseRNA Polymerase IIAGO1 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsDCL4 protein, ArabidopsisDNA-Directed RNA PolymerasesNRPD1A protein, ArabidopsisRDR2 protein, ArabidopsisRibonuclease IIIRNA-Dependent RNA PolymeraseRNA Polymerase IIRNA, Small Interfering

Identifiers

PMID39495672
PMCPMC11663600

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.