Evidence map›Paper›PMID 39495319›Full record

ArticleThe Journal of cell biology2025

Definition of phosphatidylinositol 4,5-bisphosphate distribution by freeze-fracture replica labeling.

Takuma Tsuji, Junya Hasegawa, Takehiko Sasaki, Toyoshi Fujimoto

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Subcellular Cartography of the Phosphoinositide Multiverse.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2026
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Takuma TsujiResearch Institute for Diseases of Old Age, Juntendo University Graduate School of Medicine , Tokyo, Japan.ORCID 0000-0001-9638-4974
Junya HasegawaMedical Research Institute, Tokyo Medical and Dental University , Tokyo, Japan.ORCID 0000-0003-1216-7468
Takehiko SasakiMedical Research Institute, Tokyo Medical and Dental University , Tokyo, Japan.ORCID 0000-0003-1837-3748
Toyoshi FujimotoResearch Institute for Diseases of Old Age, Juntendo University Graduate School of Medicine , Tokyo, Japan.ORCID 0000-0002-3601-7977

Funding

Japan Society of the Promotion of Science 19K07265Nakatani Foundation for Advancement of Measuring Technologies in Biomedical EngineeringTakeda Science Foundation
6 · The paper itself

Abstract

Phosphatidylinositol 4,5-bisphosphate [PtdIns(4,5)P2] is a phospholipid essential for plasma membrane functions, but its two-dimensional distribution is not clear. Here, we compared the result of sodium dodecyl sulfate-treated freeze-fracture replica labeling (SDS-FRL) of quick-frozen cells with the actual PtdIns(4,5)P2 content and the results obtained by fluorescence biosensor and by labeling of chemically-fixed membranes. In yeast, enrichment of PtdIns(4,5)P2 in the membrane compartment of Can1 (MCC)/eisosome, especially in the curved MCC/eisosome, was evident by SDS-FRL, but not by fluorescence biosensor, GFP-PLC1δ-PH. PtdIns(4,5)P2 remaining after acute ATP depletion and in the stationary phase, 30.0% and 56.6% of the control level, respectively, was not detectable by fluorescence biosensor, whereas the label intensity by SDS-FRL reflected the PtdIns(4,5)P2 amount. In PC12 cells, PtdIns(4,5)P2 was observed in a punctate pattern in the formaldehyde-fixed plasma membrane, whereas it was distributed randomly by SDS-FRL and showed clustering after formaldehyde fixation. The results indicate that the distribution of PtdIns(4,5)P2 can be defined most reliably by SDS-FRL of quick-frozen cells.

Indexed as

Cell MembraneFreeze FracturingPhosphatidylinositol 4,5-DiphosphateSaccharomyces cerevisiaeAdenosine TriphosphateAnimalsBiosensing TechniquesPC12 CellsRatsSodium Dodecyl SulfateStaining and LabelingAdenosine TriphosphatePhosphatidylinositol 4,5-DiphosphateSodium Dodecyl Sulfate

Identifiers

PMID39495319
PMCPMC11535894

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.