Evidence map›Paper›PMID 39494898›Full record

ArticleApplied and environmental microbiology2024

Assessing horizontal gene transfer in the rhizosphere of

Shweta Priya, Silvia Rossbach, Thomas Eng, Hsiao-Han Lin, Peter F Andeer, Jenny C Mortimer, Trent R Northen, Aindrila Mukhopadhyay

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shweta PriyaBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-8715-2669
Silvia RossbachDepartment of Biological Sciences, Western Michigan University, Kalamazoo, Michigan, USA.
Thomas EngBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Hsiao-Han LinEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Peter F AndeerEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Jenny C MortimerBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Trent R NorthenEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Aindrila MukhopadhyayBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-6513-7425

Funding

U.S. Department of Energy (DOE) DE-AC02-05CH11231
6 · The paper itself

Abstract

Horizontal gene transfer (HGT) is a major process by which genes are transferred between microbes in the rhizosphere. However, examining HGT remains challenging due to the complexity of mimicking conditions within the rhizosphere. Fabricated ecosystems (EcoFABs) have been used to investigate several complex processes in plant-associated environments. Here we show that EcoFABs are efficient tools to examine and measure HGT frequency in the rhizosphere. We provide the first demonstration of gene transfer via a triparental conjugation system in the

Indexed as

BrachypodiumGene Transfer, HorizontalPlasmidsPseudomonas putidaRhizosphereSoil MicrobiologyBurkholderiaEcosystemMicrobiotaPlant RootsBrachypodiumBurkholderia sp.conjugationEcoFABfrequencyHGTmesocosmPseudomonas putidarhizospheresalinitytriparental

Identifiers

PMID39494898
PMCPMC11577780

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.