Evidence map›Paper›PMID 39493890›Full record

ArticleNpj biological timing and sleep2024

Sleep and diurnal alternative polyadenylation sites associated with human APA-linked brain disorders.

Carlos C Flores, Nickolas A Pasetto, Hongyang Wang, Alexander G Dimitrov, Jon F Davis, Zhihua Jiang, Christopher J Davis, Jason R Gerstner

Abstract read
In one paragraph

Article in Npj biological timing and sleep, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Carlos C FloresDepartment of Translational Medicine and Physiology, Elson S. Floyd College of Medicine, Washington State University, Spokane, WA USA.
Nickolas A PasettoElson S. Floyd College of Medicine, Washington State University, Spokane, WA USA.
Hongyang WangDepartment of Animal Sciences, College of Agricultural, Human, and Natural Resource Sciences, Washington State University, Pullman, WA USA.
Alexander G DimitrovDepartment of Mathematics and Statistics, College of Arts and Sciences, Washington State University, Vancouver, WA USA.
Jon F DavisDepartment of Integrative Physiology and Neuroscience, Pullman, WA USA.
Zhihua JiangDepartment of Animal Sciences, College of Agricultural, Human, and Natural Resource Sciences, Washington State University, Pullman, WA USA.
Christopher J DavisDepartment of Translational Medicine and Physiology, Elson S. Floyd College of Medicine, Washington State University, Spokane, WA USA.
Jason R GerstnerDepartment of Translational Medicine and Physiology, Elson S. Floyd College of Medicine, Washington State University, Spokane, WA USA.

Funding

Characterizing evolutionarily conserved mechanisms underlying sleep, clocks, and memoryR35GM133440 · NIGMS · WASHINGTON STATE UNIVERSITY · PI GERSTNER, JASON ROBERT · 2019 to 2023
$2.3M
NIGMS NIH HHS R35 GM133440
6 · The paper itself

Abstract

Disruption of sleep and circadian rhythms are a comorbid feature of many pathologies, and can negatively influence many health conditions, including neurodegenerative disease, metabolic illness, cancer, and various neurological disorders. Genetic association studies linking sleep and circadian disturbances with disease susceptibility have mainly focused on changes in gene expression due to mutations, such as single-nucleotide polymorphisms. The interaction between sleep and/or circadian rhythms with the use of Alternative Polyadenylation (APA) has been largely undescribed, particularly in the context of other disorders. APA generates transcript isoforms by utilizing various polyadenylation sites (PASs) from the same gene affecting its mRNA translation, stability, localization, and subsequent function. Here we identified unique APAs expressed in rat brain over time-of-day, immediately following sleep deprivation, and the subsequent recovery period. From these data, we performed a secondary analysis of these sleep- or time-of-day associated PASs with recently described APA-linked human brain disorder susceptibility genes.

Indexed as

Circadian rhythms and sleepDiseases

Identifiers

PMID39493890
PMCPMC11530375

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.