Evidence map›Paper›PMID 39490301›Full record

ArticleJournal of magnetic resonance (San Diego, Calif. : 1997)2024

Neural net analysis of NMR spectra from strongly-coupled spin systems.

James H Prestegard, Geert-Jan Boons, Pradeep Chopra, John Glushka, John H Grimes, Bernd Simon

Abstract read
In one paragraph

Article in Journal of magnetic resonance (San Diego, Calif. : 1997), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. The perspective of artificial intelligence for NMR.Magnetic resonance letters · 2027
    Review
  2. Journal of the American Chemical Society · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

James H PrestegardComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, United States. Electronic address: jpresteg@uga.edu.
Geert-Jan BoonsComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, United States; Department of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CG Utrecht, Netherlands (the).
Pradeep ChopraComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, United States.
John GlushkaComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, United States.
John H GrimesComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, United States.
Bernd SimonDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06030, United States.

Funding

TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
3-O-sulfation of heparan sulfate as a regular of protein functionR01HL151617 · NHLBI · UNIVERSITY OF GEORGIA · PI BOONS, GEERT-JAN, MOREMEN, KELLEY W. · 2020 to 2023
$1.8M
Sparse NMR Labeling Approach to Glycoprotein Structure and FunctionR01GM134335 · NIGMS · UNIVERSITY OF GEORGIA · PI PRESTEGARD, JAMES H. · 2019 to 2022
$1.2M
NHLBI NIH HHS R01 HL151617NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R01 GM134335
6 · The paper itself

Abstract

Extracting parameters such as chemical shifts and coupling constants from proton NMR spectra is often a first step in using spectra for compound identification and structure determination. This can become challenging when scalar couplings between protons are comparable in size to chemical shift differences (strongly coupled), as is often the case with low-field (bench top) spectrometers. Here we explore the potential utility of AI methods, in particular neural networks, for extracting parameters from low-field spectra. Rather than seeking large experimental sets of spectra for training a network, we chose quantum mechanical simulation of sets, something that is possible with modern software packages and computer resources. We show that application of a network trained on 2-D J-resolved spectra and applied to a spectrum of iduronic acid, shows some promise, but also meets with some obstacles. We suggest that these may be overcome with improved pulse sequences and more extensive simulations.

Indexed as

Artificial intelligenceIduronic acidJ-resolvedNeural netNMRStrong coupling

Identifiers

PMID39490301
PMCPMC11573630

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.