Evidence map›Paper›PMID 39488506›Full record

ArticleScientific data2024

Chromosome-level assembly for the complex genome of land hermit crab Coenobita brevimanus.

Zhongkai Wang, Gang Wang, Haorong Li, Hui Jiang, Yishan Sun, Ge Han, Jinrui Ma, Qiuning Liu, Chen Zhang, Daizhen Zhang and 4 more

Erratum issuedAbstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Zhongkai Wang *School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China.
Gang Wang *Jiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Wetlands, Yancheng Teachers University, Yancheng, 224002, China.
Haorong Li *School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China.
Hui Jiang *College of Life Science, Hainan Normal University, Haikou, 571158, China.
Yishan Sun *School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China.
Ge HanSchool of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China.
Jinrui MaSchool of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China.
Qiuning LiuJiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Wetlands, Yancheng Teachers University, Yancheng, 224002, China.ORCID 0000-0002-1373-2425
Chen ZhangSchool of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China.
Daizhen ZhangJiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Wetlands, Yancheng Teachers University, Yancheng, 224002, China.
Huabin ZhangJiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Wetlands, Yancheng Teachers University, Yancheng, 224002, China.
Yongxin LiSchool of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China. yxli28science@sina.com.ORCID 0000-0002-9555-1387
Boping TangJiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Wetlands, Yancheng Teachers University, Yancheng, 224002, China. boptang@163.com.
Wen WangSchool of Ecology and Environment, Northwestern Polytechnical University, Xi'an, 710072, China. wenwang@nwpu.edu.cn.ORCID 0000-0002-7801-2066

Funding

National Natural Science Foundation of China (National Science Foundation of China) No. 32270487
6 · The paper itself

Abstract

Land hermit crabs are a group of shell-carrying crabs that have evolved remarkable terrestrial adaptations in behavior, morphology, physiology, and biochemistry. However, the genetic mechanisms underlying these adaptations remain unclear. In addition, usually it is very difficult to get good genome assemblies for crustaceans. In this study, we managed to assemble the first chromosome-level genome for a land hermit crab (Coenobita brevimanus) with careful manual curation. The final assembly spans 4.74 Gb, with the contig N50 of 1.75 Mb and scaffold N50 of 42.95 Mb, encompassing 117 chromosomes that account for 96.54% of the genome. The evaluations including genome BUSCO (95.26%), Merqury qv (35.88) and the mapping ratio of pair-end short reads (99.48%) showed the high-continuity of C. brevimanus genome assembly, making it the genome with the highest quality in crustaceans with genome size bigger than 3 Gb. The availability of this chromosome-scale genome of crustaceans represents a valuable resource for the land hermit crab, which represents an independent water-to-land transition evolutionary event in the animal kingdom.

Indexed as

AnomuraChromosomesGenomeAnimals

Identifiers

PMID39488506
PMCPMC11531507

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.