Evidence map›Paper›PMID 39487536›Full record

ArticleEpigenetics & chromatin2024

H3.3K122A results in a neomorphic phenotype in mouse embryonic stem cells.

Benjamin J Patty, Cailin Jordan, Santana M Lardo, Kris Troy, Sarah J Hainer

Abstract read
In one paragraph

Article in Epigenetics & chromatin, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Benjamin J PattyDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Cailin JordanDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Santana M LardoDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Kris TroyDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Sarah J HainerDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA. sarah.hainer@pitt.edu.

Funding

Chromatin-mediated mechanisms of transcription regulation in ES cellsR35GM133732 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Sarah Jane Hainer · 2019 to 2026
$3.5M
High-Throughput Computing for Genomics and Bioinformatics ResearchS10OD028483 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2021 to 2021
$574k
NIGMS NIH HHS R35 GM133732NIGMS NIH HHS R35GM133732NIH HHS S10 OD028483
6 · The paper itself

Abstract

Canonical histone H3 and histone variant H3.3 are posttranslationally modified with the genomic distribution of these marks denoting different features and these modifications may influence transcription. While the majority of posttranslational modifications occur on histone tails, there are defined modifications within the globular domain, such as acetylation of H3K122/H3.3K122. To understand the function of the amino acid H3.3K122 in transcriptional regulation, we attempted to generate H3.3K122A mouse embryonic stem (mES) cells but were unsuccessful. Through multi-omic profiling of mutant cell lines harboring two or three of four H3.3 targeted alleles, we have uncovered that H3.3K122A is neomorphic and results in lethality. This is surprising as prior studies demonstrate H3.3-null mES cells are viable and pluripotent but exhibit a reduced differentiation capacity. Together, these studies have uncovered a novel dependence of a globular domain residue within H3.3 for viability and broadened our understanding of how histone variants contribute to transcription regulation and pluripotency in mES cells.

Indexed as

HistonesMouse Embryonic Stem CellsPhenotypeAcetylationAnimalsCell DifferentiationMiceProtein Processing, Post-TranslationalHistones

Identifiers

PMID39487536
PMCPMC11531108

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.