Evidence map›Paper›PMID 39487330›Full record

ArticleCommunications biology2024

NMR investigation of FOXO4-DNA interaction for discriminating target and non-target DNA sequences.

Donghoon Kang, Min June Yang, Hae-Kap Cheong, Chin-Ju Park

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Donghoon Kang *Department of Chemistry, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.
Min June Yang *Department of Chemistry, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea.ORCID 0000-0001-7143-6483
Hae-Kap CheongOchang Center, Korea Basic Science Institute, Chungcheongbuk-do, 28119, Republic of Korea.
Chin-Ju ParkDepartment of Chemistry, Gwangju Institute of Science and Technology, Gwangju, 61005, Republic of Korea. cjpark@gist.ac.kr.ORCID 0000-0002-7750-1554

Funding

Korea Basic Science Institute (KBSI) A412550National Research Foundation of Korea (NRF) 2021R1A2C1004669National Research Foundation of Korea (NRF) RS-2024-00411137
6 · The paper itself

Abstract

Forkhead box O4 (FOXO4), a human transcription factor, recognizes target DNA through its forkhead domain (FHD) while maintaining comparable binding affinity to non-target DNA. The conserved region 3 (CR3), a transactivation domain, modulates DNA binding kinetics to FHD and contributes to target DNA selection, but the underlying mechanism of this selection remains elusive. Using paramagnetic relaxation enhancement analysis, we observed a minor state of CR3 close to FHD in the presence of non-target DNA, a state absent when FHD interacts with target DNA. This minor state suggests that CR3 effectively masks the non-target DNA-binding interface on FHD. The interaction weakens significantly under high salt concentration, implying that CR3 or high salt concentrations can modulate electrostatic interactions with non-target DNA. Our

Indexed as

Cell Cycle ProteinsDNAForkhead Transcription FactorsProtein BindingBase SequenceBinding SitesHumansMagnetic Resonance SpectroscopyModels, MolecularNuclear Magnetic Resonance, BiomolecularCell Cycle ProteinsDNAForkhead Transcription FactorsFOXO4 protein, human

Identifiers

PMID39487330
PMCPMC11530643

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.