Evidence map›Paper›PMID 39485082›Full record

ArticleBJU international2025

A luminal non-coding RNA-based genomic classifier confirms favourable outcomes in patients with clinically organ-confined bladder cancer treated with radical cystectomy.

Joep J de Jong, James A Proudfoot, Siamak Daneshmand, Robert S Svatek, Vikram Narayan, Ewan A Gibb, Elai Davicioni, Shreyas Joshi, Aaron Dahmen, Roger Li and 5 more

Abstract read
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Article in BJU international, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

15 authors.

Joep J de JongErasmus University Medical Center, Rotterdam, The Netherlands.ORCID https://orcid.org/0000-0003-2378-367X
James A ProudfootVeracyte Inc., San Francisco, CA, USA.
Siamak DaneshmandDepartment of Urology, USC/Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, USA.
Robert S SvatekUniversity of Texas Health San Antonio, San Antonio, TX, USA.
Vikram NarayanEmory University School of Medicine, Atlanta, GA, USA.
Ewan A GibbVeracyte Inc., San Francisco, CA, USA.
Elai DavicioniVeracyte Inc., San Francisco, CA, USA.
Shreyas JoshiEmory University School of Medicine, Atlanta, GA, USA.
Aaron DahmenMoffitt Cancer Center, Tampa, FL, USA.
Roger LiMoffitt Cancer Center, Tampa, FL, USA.ORCID https://orcid.org/0000-0003-1274-7200
Brant A InmanWestern University, London, Ontario, Canada.ORCID https://orcid.org/0000-0002-6060-4485
Paras ShahMayo Clinic, Rochester, MN, USA.
Iftach ChaplinUniversity of Texas Southwestern, Dallas, TX, USA.
Jonathan WrightUniversity of Washington, Seattle, WA, USA.
Yair LotanUniversity of Texas Southwestern, Dallas, TX, USA.ORCID https://orcid.org/0000-0001-5692-2723

Funding

Wilson Foundation
6 · The paper itself

Abstract

objectiveTo further evaluate a genomic classifier (GC) in a cohort of patients undergoing radical cystectomy (RC), as long non-coding RNA (lncRNA)-based genomic profiling has suggested utility in identifying a distinct tumour subgroup corresponding to a favourable prognosis in patients with bladder cancer. PATIENTS AND

methodsTranscriptome-wide expression profiling using Decipher Bladder was performed on transurethral resection of bladder tumour samples from a cohort of patients with high-grade, clinically organ-confined (cTa-T2N0M0) urothelial carcinoma (UC) who subsequently underwent RC without any neoadjuvant therapy (n = 226). The lncRNA-based luminal favourable status was determined using a previously developed GC. The primary endpoint was overall survival (OS) after RC. Secondary endpoints included cancer-specific mortality and upstaging at RC.

resultsIn the study, 134 patients were clinical non-muscle-invasive bladder cancer (cTa/Tis/T1) and 92 patients were cT2. We identified 60 patients with luminal favourable subtype, all of which showed robust gene expression patterns associated with less aggressive bladder cancer biology. On multivariate analysis, patients with the luminal favourable subtype (vs without) were significantly associated with lower odds of upstaging to pathological (p)T3+ disease (odds ratio [OR] 0.32, 95% confidence interval [CI] 0.12-0.82; P = 0.02), any upstaging (OR 0.41, 95% CI 0.20-0.83; P = 0.01), and any upstaging and/or pN+ (OR 0.50, 95% CI 0.25-1.00; P = 0.05). Luminal favourable bladder cancer was significantly associated with better OS (hazard ratio 0.33, 95% CI 0.15-0.74; P = 0.007).

conclusionsThis study validates the performance of the GC for identifying UCs with a luminal favourable subtype, harbouring less aggressive tumour biology.

Indexed as

Carcinoma, Transitional CellCystectomyRNA, Long NoncodingUrinary Bladder NeoplasmsAgedAged, 80 and overFemaleGene Expression ProfilingHumansMaleMiddle AgedPrognosisTreatment OutcomeRNA, Long Noncodingbladder cancergene expression profilingluminal favourablemolecular subtypingradical cystectomy

Identifiers

PMID39485082
PMCPMC11913596

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.