Evidence map›Paper›PMID 39484412›Full record

ArticlebioRxiv : the preprint server for biology2024

Structural identification of the RY12 domain of RyR1 as an ADP sensor and the target of the malignant hyperthermia therapeutic dantrolene.

Kookjoo Kim, Huan Li, Qi Yuan, Zephan Melville, Ran Zalk, Amédée des Georges, Joachim Frank, Wayne A Hendrickson, Andrew R Marks, Oliver B Clarke

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Kookjoo KimDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Huan LiDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Qi YuanDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Zephan MelvilleDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Ran ZalkIlse Katz Institute for Nanoscale Science & Technology, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Amédée des GeorgesDepartment of Molecular Pathobiology, College of Dentistry, New York University, New York, NY 10010, USA.
Joachim FrankDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Wayne A HendricksonDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Andrew R MarksDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Oliver B ClarkeDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-1876-196X

Funding

Structure-Function of Calcium Channel Complexes in Cardiac Physiology and DiseaseP01HL164319 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREW Robert MARKS · 2023 to 2026
$12.1M
Exploring the Molecular Physiology of Atrial FibrillationR01HL140934 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARKS, ANDREW ROBERT, MARX, STEVEN O · 2018 to 2025
$6.0M
Understanding membrane proteins’ allosteric modulation with cryo-EMR35GM133598 · NIGMS · NEW YORK UNIVERSITY · PI Amedee des Georges · 2019 to 2026
$3.4M
Structure-function analysis for elucidating pathogenicity of cardiac ryanodine receptor genetic variantsR01HL145473 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARKS, ANDREW ROBERT, SHEPARD, KENNETH L · 2019 to 2022
$3.1M
Ryanodine Receptor Defects in Cardiomyopathy Caused by Lamin A/C Gene MutationsR01HL142903 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARKS, ANDREW ROBERT, WORMAN, HOWARD J · 2019 to 2022
$1.8M
Structural basis for allosteric regulation of RyR1R01AR077720 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLARKE, OLIVER BIGGS · 2021 to 2025
$1.7M
NHLBI NIH HHS P01 HL164319NHLBI NIH HHS R01 HL140934NHLBI NIH HHS R01 HL142903NHLBI NIH HHS R01 HL145473NIAMS NIH HHS R01 AR077720NIGMS NIH HHS R35 GM133598
6 · The paper itself

Abstract

Malignant hyperthermia (MH) is a life-threatening pharmacogenetic condition triggered by volatile anesthetics, which activate pathogenic RyR1 mutants. The small molecule therapeutic dantrolene has long been used to treat MH. However, the binding site and mechanism of dantrolene remain unclear. Here, we present cryo-EM structures of RyR1 bound to dantrolene and the MH trigger agent 4-chloro-m-cresol (4CmC), revealing the dantrolene and 4CmC binding sites in atomic detail. Dantrolene binds stacked with ATP or ADP in the RY12 domain at the corner of the receptor, inducing a conformational change in this domain which is allosterically coupled to pore closure. Functional analyses revealed that ATP or ADP was required for dantrolene inhibition, and a single point mutation that disrupts the peripheral ATP binding site abolished ATP/ADP-dependent dantrolene inhibition. Strikingly, in the absence of dantrolene, this site selectively binds two ADP molecules, suggesting a possible role in ATP/ADP ratio sensing.

Identifiers

PMID39484412
PMCPMC11526878

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.