Evidence map›Paper›PMID 39484409›Full record

ArticlebioRxiv : the preprint server for biology2026

AI-readiness Criteria for Biomedical Data.

Timothy Clark, Harry Caufield, Jillian A Parker, Sadnan Al Manir, Edilberto Amorim, James Eddy, Nayoon Gim, Brian Gow, Wesley Goar, Jan N Hansen and 22 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

Timothy ClarkUniversity of Virginia.ORCID 0000-0003-4060-7360
Harry CaufieldLawrence Berkeley National Laboratory.ORCID 0000-0001-5705-7831
Jillian A ParkerUniversity of California San Diego.ORCID 0000-0003-4535-3486
Sadnan Al ManirUniversity of Virginia.ORCID 0000-0003-4647-3877
Edilberto AmorimUniversity of California San Francisco.ORCID 0000-0001-6972-5622
James EddyAvantiqor.ORCID 0000-0001-9758-0176
Nayoon GimUniversity of Washington.ORCID 0000-0001-6169-7452
Brian GowMassachusetts Institute of Technology.ORCID 0000-0002-7682-1943
Wesley GoarNationwide Children's Hospital.ORCID 0000-0002-9954-3982
Jan N HansenStanford University.ORCID 0000-0002-0489-7535
Nomi HarrisLawrence Berkeley National Laboratory.ORCID 0000-0001-6315-3707
Henning HermjakobEuropean Molecular Biology Laboratory - European Bioinformatics Institute.ORCID 0000-0001-8479-0262
Marcin JoachimiakLawrence Berkeley National Laboratory.ORCID 0000-0001-8175-045X
Gianna JordanSage Bionetworks.ORCID 0000-0003-2043-5805
In-Hee LeeNationwide Children's Hospital.ORCID 0000-0002-8857-1355
Shannon K McWeeneyOregon Health and Science University.ORCID 0000-0001-8333-6607
Camille NebekerUniversity of California San Diego.ORCID 0000-0001-6819-1796
Milen NikolovSage Bionetworks.ORCID 0000-0003-2647-3255
Sarah J RatcliffeUniversity of Virginia.
Justin ReeseLawrence Berkeley National Laboratory.ORCID 0000-0002-2170-2250
Jamie ShafferUniversity of Washington.ORCID 0000-0003-4045-7665
Nathan SheffieldUniversity of Virginia.ORCID 0000-0001-5643-4068
Gloria SheynkmanUniversity of Virginia.ORCID 0000-0002-4223-9947
James StevensonNationwide Children's Hospital.ORCID 0000-0002-2568-6163
Jake Y ChenUniversity of Alabama at Birmingham.ORCID 0000-0001-8829-7504
Chris MungallLawrence Berkeley National Laboratory.ORCID 0000-0002-6601-2165
Alex WagnerNationwide Children's Hospital.ORCID 0000-0002-2502-8961
Sek Won KongBoston Children's Hospital.ORCID 0000-0003-4877-7567
Satrajit S GhoshMassachusetts Institute of Technology.ORCID 0000-0002-5312-6729
Bhavesh PatelCalifornia Medical Innovations Institute.ORCID 0000-0002-0307-262X
Andrew WilliamsTufts University.ORCID 0000-0002-0692-412X
Monica C Munoz-TorresUniversity of Colorado Anschutz.ORCID 0000-0001-8430-6039

Funding

Bridge2AI:Salutogenesis Data Generation ProjectOT2OD032644 · OD · WASHINGTON UNIVERSITY · PI BAXTER, SALLY LIU, CHUTE, CHRISTOPHER G · 2022 to 2025
$32.7M
Bridge2AI: Patient-Focused Collaborative Hospital Repository Uniting Standards (CHoRUS) for Equitable AIOT2OD032701 · OD · MASSACHUSETTS GENERAL HOSPITAL · PI BIHORAC, AZRA, CLERMONT, GILLES · 2022 to 2025
$24.6M
Bridge2AI: Cell Maps for AI (CM4AI) Data Generation ProjectOT2OD032742 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jean-Christophe Bélisle-Pipon, TIMOTHY W CLARK · 2022 to 2026
$21.5M
Bridge2AI: Voice as a Biomarker of Health - Building an ethically sourced, bioaccoustic database to understand disease like never beforeOT2OD032720 · OD · UNIVERSITY OF SOUTH FLORIDA · PI BENSOUSSAN, YAEL EMILIE, BÉLISLE-PIPON, JEAN-CHRISTOPHE · 2022 to 2025
$18.0M
Ethics Core (FABRIC)U54HG012510 · NHGRI · YALE UNIVERSITY · PI MALIN, BRADLEY A. · 2022 to 2025
$11.2M
Tool Core- BoutrosU54HG012517 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BUI, ALEX, PING, PEIPEI · 2022 to 2025
$10.6M
Integration, Dissemination and Evaluation(BRIDGE) Center for the NIH Bridge to Artificial Intelligence (BRIDGE2AI) ProgramU54HG012513 · NHGRI · UNIVERSITY OF COLORADO DENVER · PI MUNOZ-TORRES, MONICA CECILIA · 2022 to 2025
$9.5M
NHGRI NIH HHS U54 HG012510NHGRI NIH HHS U54 HG012513NHGRI NIH HHS U54 HG012517NIH HHS OT2 OD032644NIH HHS OT2 OD032701NIH HHS OT2 OD032720NIH HHS OT2 OD032742
6 · The paper itself

Abstract

Biomedical research is rapidly adopting artificial intelligence (AI). Yet the inherent complexity of biomedical data preparation requires implementing actionable, robust criteria for ethical and explainable AI (XAI) at the "pre-model" stage, encompassing data acquisition, detailed transformations, and ethical governance. Simple conformance to FAIR (Findable, Accessible, Interoperable, Reusable) Principles is insufficient. Here, we define criteria and practices for reliable AI-readiness of biomedical data, developed by the

Identifiers

PMID39484409
PMCPMC11526931

What OpenQuestion holds

Textmetadata
LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.