Evidence map›Paper›PMID 39483897›Full record

ArticleResearch square2024

Neural network analysis as a novel skin outcome in a trial of belumosudil in patients with systemic sclerosis.

Ilayda Gunes, Elana Bernstein, Shawn E Cowper, Gauri Panse, Niki Pradhan, Lucy Duran Camacho, Nicolas Page, Elizabeth Bundschuh, Alyssa Williams, Mary Carns and 11 more

Abstract readPreprint
In one paragraph

Article in Research square, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Ilayda GunesYale School of Medicine, Department of Internal Medicine, Section of Rheumatology, Allergy, & Immunology.
Elana BernsteinColumbia University.
Shawn E CowperYale School of Medicine, Departments of Dermatology and Pathology.
Gauri PanseYale School of Medicine, Departments of Dermatology and Pathology.
Niki PradhanColumbia University.
Lucy Duran CamachoYale School of Medicine, Department of Internal Medicine, Section of Rheumatology, Allergy, & Immunology.
Nicolas PageYale School of Medicine, Department of Internal Medicine, Section of Rheumatology, Allergy, & Immunology.
Elizabeth BundschuhYale School of Medicine, Department of Internal Medicine, Section of Rheumatology, Allergy, & Immunology.
Alyssa WilliamsYale School of Medicine, Department of Internal Medicine, Section of Rheumatology, Allergy, & Immunology.
Mary CarnsNorthwestern University Feinberg School of Medicine, Department of Medicine, Division of Rheumatology.
Kathleen ArenNorthwestern University Feinberg School of Medicine, Department of Medicine, Division of Rheumatology.
Sarah FantusNorthwestern University Feinberg School of Medicine, Department of Medicine, Division of Rheumatology.
Elizabeth R VolkmannUniversity of California, Los Angeles, David Geffen School of Medicine, Division of Rheumatology.
Heather BukiriUniversity of California, Los Angeles, David Geffen School of Medicine, Division of Rheumatology.
Chase CorreiaNorthwestern University Feinberg School of Medicine, Department of Medicine, Division of Rheumatology.
Rui WangSanofi, Translational medicine early development.
Vijaya KolachalamaBoston University Chobanian & Avedisian School of Medicine.
F Perry WilsonYale School of Medicine, Clinical and Translational Research Accelerator.
Seamus MaweJackson Laboratory.
J Matthew MahoneyJackson Laboratory.
Monique HinchcliffYale School of Medicine, Department of Internal Medicine, Section of Rheumatology, Allergy, & Immunology.

Funding

Career Development in Women's Health (CDWH)K12HD055884 · NICHD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI DUNAIF, ANDREA E · 2007 to 2016
$4.2M
Pathogenic Wnt-beta catenin target genes in macrophages and fibrosisR01AR073270 · NIAMS · YALE UNIVERSITY · PI HINCHCLIFF, MONIQUE EVANGELINE · 2019 to 2023
$2.6M
Personalized Recommendations for Acute Kidney Injury (AKI) Care Using a Kidney Action Team: A Randomized TrialR01HS027626 · AHRQ · YALE UNIVERSITY · PI WILSON, FRANCIS PERRY · 2021 to 2025
$1.9M
Molecular Biomarkers of Improvement for Patients with Systemic Sclerosis in an Open Label Trial of Mycophenolate MofetilR21AR068035 · NIAMS · DARTMOUTH COLLEGE · PI HINCHCLIFF, MONIQUE EVANGELINE, WHITFIELD, MICHAEL L · 2015 to 2016
$400k
Predictive Ability of Gene Expression Signatures In Skin as SSc BiomarkersK23AR059763 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HINCHCLIFF, MONIQUE EVANGELINE · 2013 to 2015
$390k
AHRQ HHS R01 HS027626NIAMS NIH HHS K23 AR059763NIAMS NIH HHS R01 AR073270NIAMS NIH HHS R21 AR068035NICHD NIH HHS K12 HD055884
6 · The paper itself

Abstract

Background: The modified Rodnan skin score (mRSS), used to measure dermal thickness in patients with systemic sclerosis (SSc), is agnostic to inflammation and vasculopathy. Previously, we demonstrated the potential of neural network-based digital pathology applied to stained skin biopsies from SSc patients as a quantitative outcome. We leveraged deep learning and histologic analyses of clinical trial biopsies to decipher SSc skin features 'seen' by artificial intelligence (AI). Methods: Adults with diffuse cutaneous SSc (disease duration ≤ 6 years) enrolled in an open-label trial evaluating belumosudil underwent serial mRSS assessment and dorsal arm biopsies at week 0, 24 and 52/end of trial. Two blinded dermatopathologists independently scored stained sections [Masson's trichrome, hematoxylin and eosin (H&E), CD3, CD34, CD8, α smooth muscle actin (αSMA)] for 16 published SSc dermal pathological parameters. We applied our previously published deep learning model to generate QIF signatures/biopsy and generated Fibrosis Scores. Associations between Fibrosis Score and mRSS (Spearman correlation); and between Fibrosis Score mRSS versus histologic parameters [odds ratios (OR)] were determined. Results: Only ten patients were enrolled because the sponsor terminated the trial early. Median, interquartile range (IQR) for mRSS change (0-52 weeks) for the five participants with paired biopsies was - 2.5 (-11-7.5), and for the ten participants was - 2 (-9-7.5). The correlation between Fibrosis Score and mRSS was R = 0.3; p = 0.674. Per 1-unit mRSS change (0-52W), histologic parameters with the greatest associated changes were (OR, p-value): telangiectasia (2.01, 0.001), perivascular CD3+ (1.03, 0.015), and % of CD8 + among CD3+ (1.08, 0.031). Likewise, per 1-unit Fibrosis Score change, parameters with greatest changes were (OR, p-value): hyalinized collagen (1.1, < 0.001), subcutaneous (SC) fat loss (1.47, < 0.001), thickened intima (1.21, 0.005), and eccrine entrapment (1.14, 0.046). Conclusions: Belumosudil was associated with a non-clinically meaningful improvement in mRSS. Fibrosis Score changes correlated with histologic feature changes (

Indexed as

AlexNetartificial intelligencebelumosudilDeep Neural Networkdermal fibrosismodified Rodnan skin scoreoutcome measureoutcomessclerodermaskin fibrosissystemic sclerosis

Identifiers

PMID39483897
PMCPMC11527259

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.