Evidence map›Paper›PMID 39482420›Full record

ArticleCommunications biology2024

Innovative label-free lymphoma diagnosis using infrared spectroscopy and machine learning on tissue sections.

Charlotte Delrue, Mattias Hofmans, Jo Van Dorpe, Malaïka Van der Linden, Zen Van Gaever, Tessa Kerre, Marijn M Speeckaert, Sander De Bruyne

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Charlotte DelrueDepartment of Nephrology, Department of Internal Medicine and Pediatrics, Ghent University Hospital, Ghent, Belgium.
Mattias HofmansDepartment of Diagnostic Sciences, Ghent University, Ghent, Belgium.
Jo Van DorpeDepartment of Pathology, Ghent University Hospital, Ghent, Belgium.ORCID 0000-0001-8175-2930
Malaïka Van der LindenDepartment of Pathology, Ghent University Hospital, Ghent, Belgium.
Zen Van GaeverData & AI, Delaware, Ghent, Belgium.
Tessa KerreDepartment of Hematology, Department of Internal Medicine and Pediatrics, Ghent University Hospital, Ghent, Belgium.
Marijn M Speeckaert *Department of Nephrology, Department of Internal Medicine and Pediatrics, Ghent University Hospital, Ghent, Belgium.
Sander De Bruyne *Department of Diagnostic Sciences, Ghent University, Ghent, Belgium. SanderR.Debruyne@ugent.be.ORCID 0000-0002-9041-4404

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The diagnosis of lymphomas is challenging due to their diverse histological presentations and clinical manifestations. There is a need for inexpensive tools that require minimal expertise and are accessible for routine laboratories. Contrastingly, current conventional diagnostic methods are often found only in specialized environments. Attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy offers a nondestructive and user-friendly approach in the analysis of a wide range of samples. In this paper, we determined whether the technique coupled with machine learning can detect and differentiate lymphoma within lymphoid tissue samples. Tissue sections from 295 individuals diagnosed with lymphoma and 389 individuals without the disease were analyzed using ATR-FTIR spectroscopy. The resulting spectral dataset was split using a 70:30 train-test split. Partial least Squares Discriminant Analysis (PLS-DA) models were trained to distinguish non-malignant lymphoid tissue from lymphoma samples and to differentiate between subtypes. On the training set (n = 478), significant spectral differences were mainly identified in the 1800-900 cm

Indexed as

LymphomaMachine LearningAdultAgedFemaleHumansLeast-Squares AnalysisMaleMiddle AgedSpectroscopy, Fourier Transform Infrared

Identifiers

PMID39482420
PMCPMC11528060

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.