Evidence map›Paper›PMID 39482310›Full record

ArticleScientific data2024

Near complete assembly of Pyricularia penniseti infecting Cenchrus grass identified its eight core chromosomes.

Yuyong Li, Xianjun Wang, Jianqiang Huang, Zhenyu Fang, Xiwen Lian, Guodong Lu, Guifang Lin, Zonghua Wang, Baohua Wang, Xiuxiu Li and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Metabolome profile and microbial community structure ofFrontiers in bioengineering and biotechnology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yuyong Li *Fujian Universities Key Laboratory for Plant-Microbe Interaction, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xianjun Wang *State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Jianqiang HuangState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Zhenyu FangState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xiwen LianFujian Universities Key Laboratory for Plant-Microbe Interaction, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Guodong LuState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Guifang LinBasic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.ORCID 0000-0002-4943-8607
Zonghua WangFuzhou Institute of Oceanography, Minjiang University, Fuzhou, 350108, China.ORCID 0000-0002-0869-9683
Baohua WangState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. wbaohua@fafu.edu.cn.
Xiuxiu LiState Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. lixiuxiu891012@163.com.
Huakun ZhengNational Engineering Research Center of JUNCAO Technology, College of Juncao Science and Ecology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. huakunzheng@163.com.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32172365National Natural Science Foundation of China (National Science Foundation of China) 32272513
6 · The paper itself

Abstract

Fungi from the Pyricularia genus cause blast disease in many economically important crops and grasses, such as wheat, rice, and Cenchrus grass JUJUNCAO. Structure variation associated with the gain and loss of effectors contributes largely to the adaptive evolution of this fungus towards diverse host plants. A telomere-to-telomere genome assembly would facilitate the identification of genome-wide structural variations through comparative genomics. Here, we report a telomere-to-telomere, near-complete genome assembly of a Pyricularia penniseti isolate JC-1 infecting JUJUNCAO. The assembly consists of eight core chromosomes and two supernumerary chromosomes, named mini1 and mini2, spanning 42.1 Mb. We annotated 12,156 protein-coding genes and identified 4.54% of the genome as repetitive sequences. The two supernumerary chromosomes contained fewer genes and more repetitive sequences than the core chromosomes. Our genome and results provide valuable resources for the future study in genome evolution, structure variation and host adaptation of the Pyricularia fungus.

Indexed as

AscomycotaCenchrusChromosomes, FungalGenome, FungalPlant DiseasesRepetitive Sequences, Nucleic Acid

Identifiers

PMID39482310
PMCPMC11528102

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.