Evidence map›Paper›PMID 39480090›Full record

ArticleJournal of virology2024

Cyclophilin A facilitates HIV-1 integration.

Adrian Padron, Richa Dwivedi, Rajasree Chakraborty, Prem Prakash, Kyusik Kim, Jiong Shi, Jinwoo Ahn, Jui Pandhare, Jeremy Luban, Christopher Aiken and 2 more

Abstract read
In one paragraph

Article in Journal of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Exploring the Structural Divergence of HIV and SRLV Lentiviral Capsids.Journal of the American Chemical Society · 2025
    Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Adrian PadronCenter for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee, USA.ORCID 0000-0002-2142-0501
Richa DwivediCenter for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee, USA.
Rajasree ChakrabortyCenter for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee, USA.
Prem PrakashCenter for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee, USA.ORCID 0000-0001-6507-7875
Kyusik KimProgram in Molecular Medicine University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Jiong ShiDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Jinwoo AhnDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Jui PandhareCenter for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee, USA.
Jeremy LubanProgram in Molecular Medicine University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Christopher AikenDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0002-2476-4078
Muthukumar BalasubramaniamCenter for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee, USA.
Chandravanu DashCenter for AIDS Health Disparities Research, Meharry Medical College, Nashville, Tennessee, USA.ORCID 0000-0003-4466-8355

Funding

The RCMI Program in Health Disparities Research at Meharry Medical College - SupplementU54MD007586 · NIMHD · MEHARRY MEDICAL COLLEGE · PI SANIKA SAMUEL CHIRWA · 2017 to 2026
$48.2M
CHEETAH Center for the Structural Biology of HIV Infection, Restriction, and Viral DynamicsU54AI170856 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Owen Pornillos · 2022 to 2026
$34.4M
Tennessee CFAR: Implementation of Culturally Responsive Trauma-Informed Care with Youth with HIV in Memphis, TNP30AI110527 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI John Koethe · 2015 to 2026
$27.5M
Role of GRIN2 in ART and SUD associated neurological deficits.R01DA057204 · NIDA · MEHARRY MEDICAL COLLEGE · PI Chandravanu Dash · 2022 to 2026
$3.7M
Defining the nuclear import pathways of HIV-1R01AI162694 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI CAMPBELL, EDWARD M · 2021 to 2024
$2.9M
Spatiotemporal Staging of the HIV-1 Preintegration complexR01AI170228 · NIAID · MEHARRY MEDICAL COLLEGE · PI Chandravanu Dash · 2022 to 2026
$2.8M
Role of the Viral Capsid in HIV-1 IntegrationR01AI136740 · NIAID · MEHARRY MEDICAL COLLEGE · PI Chandravanu Dash · 2019 to 2026
$2.2M
Enhancing Virology Training of Underrepresented Minority Students through Summer ResearchR25AI164610 · NIAID · MEHARRY MEDICAL COLLEGE · PI DASH, CHANDRAVANU · 2021 to 2025
$1.8M
Role of the Viral Capsid in HIV-1 Integration.R56AI122960 · NIAID · MEHARRY MEDICAL COLLEGE · PI DASH, CHANDRAVANU · 2016 to 2016
$376k
HHS | National Institutes of Health (NIH) R01DA057204 R01AI17028 R01AI162694 R01AI136740 and R25AI164610NIAID NIH HHS P30 AI110527NIAID NIH HHS R01 AI136740NIAID NIH HHS R01 AI162694NIAID NIH HHS R01 AI170228NIAID NIH HHS R25 AI164610NIAID NIH HHS R56 AI122960NIAID NIH HHS U54 AI170856NIDA NIH HHS R01 DA057204NIMHD NIH HHS U54 MD007586
6 · The paper itself

Abstract

Cyclophilin A (CypA) binds to the HIV-1 capsid to facilitate reverse transcription and nuclear entry and counter the antiviral activity of TRIM5α. Interestingly, recent studies suggest that the capsid enters the nucleus of an infected cell and uncoats prior to integration. We have previously reported that the capsid protein regulates HIV-1 integration. Therefore, we probed whether CypA-capsid interaction also regulates this post-nuclear entry step. First, we challenged CypA-expressing (CypA IMPORTANCE: Interaction between the HIV-1 capsid and host cellular factors is essential for infection. However, the molecular details and functional consequences of viral-host factor interactions during HIV-1 infection are not fully understood. Over 30 years ago, Cyclophilin A (CypA) was identified as the first host protein to bind to the HIV-1 capsid. Now it is established that CypA-capsid interaction promotes reverse transcription and nuclear entry of HIV-1. In addition, CypA blocks TRIM5α-mediated restriction of HIV-1. In this report, we show that CypA promotes the post-nuclear entry step of HIV-1 integration by binding to the viral capsid. Notably, we show that CypA stimulates the viral DNA integration activity of the HIV-1 preintegration complex. Collectively, our studies identify a novel role of CypA during the early steps of HIV-1 infection. This new knowledge is important because recent reports suggest that an operationally intact HIV-1 capsid enters the nucleus of an infected cell.

Indexed as

Antiviral Restriction FactorsCapsid ProteinsCyclophilin AHIV-1HIV InfectionsTripartite Motif ProteinsUbiquitin-Protein LigasesVirus IntegrationCapsidCyclosporineHEK293 CellsHumansProtein BindingProvirusesReverse TranscriptionVirus ReplicationAntiviral Restriction FactorsCapsid ProteinsCyclophilin ACyclosporineTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein LigasescapsidCyclophilin A (CypA)human immunodeficiency virus (HIV)integrationreverse transcription nuclear entry

Identifiers

PMID39480090
PMCPMC11575316

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.