Evidence map›Paper›PMID 39478124›Full record

ArticleBritish journal of cancer2024

The potential clinical utility of Whole Genome Sequencing for patients with cancer: evaluation of a regional implementation of the 100,000 Genomes Project.

Elaine Y L Leung, Helen L Robbins, Shafquat Zaman, Neeraj Lal, Dion Morton, Lisa Dew, Anthony P Williams, Yvonne Wallis, Jennie Bell, Manoj Raghavan and 2 more

Abstract read
In one paragraph

Article in British journal of cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. The value of large-scale programmes in human genomics.European journal of human genetics : EJHG · 2025
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Elaine Y L Leung *Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0001-9748-7270
Helen L Robbins *Institute of Immunology and Immunotherapy, University of Birmingham, Birmingham, UK.
Shafquat ZamanInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Neeraj LalInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Dion MortonInstitute of Applied Health Research, University of Birmingham, Birmingham, UK.
Lisa DewCentral and South Genomic Medicine Service Alliance, Birmingham, UK.
Anthony P WilliamsThe Wessex NHS Genomics Medicine Centre (WGMC), the University of Southampton, Southampton, UK.
Yvonne WallisThe West Midlands Regional Genomics Laboratory (WMRGL), Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.
Jennie BellThe West Midlands Regional Genomics Laboratory (WMRGL), Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.
Manoj RaghavanInstitute of Immunology and Immunotherapy, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0002-5464-2602
Gary MiddletonInstitute of Immunology and Immunotherapy, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0001-5695-3474
Andrew D BeggsInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK. a.beggs@bham.ac.uk.ORCID http://orcid.org/0000-0003-0784-2967

Funding

Cancer Research UK (CRUK) C31641/A23923RCUK | Medical Research Council (MRC) MR/X006433/1
6 · The paper itself

Abstract

backgroundThe 100,000 Genomes Project established infrastructure for Whole Genome Sequencing (WGS) in the United Kingdom.

methodsA retrospective study of cancer patients recruited to the 100,000 Genomes Project by the West Midlands Genomics Medicine Centre, evaluating clinical relevance of results.

resultsAfter excluding samples with no sequencing data (1678/4851; 34.6%), 3166 sample sets (germline and somatic) from 3067 participants were sequenced. Results of 1256 participants (41.0%) were interpreted (excluding participants who died (308/3067; 10.0%) or were clinically excluded (1503/3067; 49.0%)). Of these, 323 (25.7%) had no variants in genes which may alter management (Domain 1 genes). Of the remaining 933 participants, 552 (59.2%) had clinical recommendations made (718 recommendations in total). These included therapeutic recommendations (377/933; 40.4%), such as clinical trial, unlicensed or licensed therapies or high TMB recommendations, and germline variants warranting clinical genetics review (85/933; 9.1%). At the last follow up, 20.2% of all recommendations were followed (145/718). However, only a small proportion of therapeutic recommendations were followed (5.1%, 25/491).

conclusionsThe 100,000 Genomes Project has established infrastructure and regional experience to support personalised cancer care. The majority of those with successful sequencing had actionable variants. Ensuring GTAB recommendations are followed will maximise benefits for patients.

Indexed as

NeoplasmsWhole Genome SequencingAdultAgedAged, 80 and overFemaleGenomicsHumansMaleMiddle AgedPrecision MedicineRetrospective StudiesUnited Kingdom

Identifiers

PMID39478124
PMCPMC11589591

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.