Evidence map›Paper›PMID 39478014›Full record

ArticleScientific reports2024

Stage dependent microbial dynamics in hepatocellular carcinoma and adjacent normal liver tissues.

Hee Eun Jo, Sophallika Khom, Sumi Lee, Su Hyeon Cho, Shin Young Park, Ga Ram You, Hyosin Kim, Nah Ihm Kim, Jae-Ho Jeong, Jae Hyun Yoon and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hee Eun JoTechnology Innovation Research Division, World Institute of Kimchi, Gwangju, 61755, Republic of Korea.
Sophallika KhomDepartment of Gastroenterology and Hepatology, Chonnam National University Hospital and Medical School, Gwangju, 61469, Republic of Korea.
Sumi LeeDepartment of Gastroenterology and Hepatology, Chonnam National University Hospital and Medical School, Gwangju, 61469, Republic of Korea.
Su Hyeon ChoDepartment of Gastroenterology and Hepatology, Chonnam National University Hospital and Medical School, Gwangju, 61469, Republic of Korea.
Shin Young ParkDepartment of Gastroenterology and Hepatology, Chonnam National University Hospital and Medical School, Gwangju, 61469, Republic of Korea.
Ga Ram YouDepartment of Gastroenterology and Hepatology, Hwasun Chonnam National University Hospital and Medical School, Jeonnam, 58128, Republic of Korea.
Hyosin KimDepartment of Surgery, Chonnam National University Hospital and Medical School, Gwangju, 61469, Republic of Korea.
Nah Ihm KimDeparment of Pathology, Chonnam National University Hospital and Medical School, Gwangju, 61469, Republic of Korea.
Jae-Ho JeongDepartment of Biomedical Sciences and Department of Microbiology, Chonnam National University Medical School, Gwangju, 61469, Republic of Korea. jeongjaeho@chonnam.ac.kr.
Jae Hyun YoonDepartment of Gastroenterology and Hepatology, Chonnam National University Hospital and Medical School, Gwangju, 61469, Republic of Korea. zenmake14@gmail.com.
Misun YunTechnology Innovation Research Division, World Institute of Kimchi, Gwangju, 61755, Republic of Korea. misun.yun@wikim.re.kr.

Funding

Chonnam National University Hospital Biomedical Research Institute BCRI24041National Research Foundation of Korea (NRF) grants NRF-2020R1C1C1015024National Research Foundation of Korea (NRF) grants NRF-2021R1F1A1061719World Institute of Kimchi funded by the Ministry of Science and ICT, Republic of Korea KE2403-1
6 · The paper itself

Abstract

The interactive pathway of the gut-liver axis underscores the significance of microbiome modulation in the pathogenesis and progression of various liver diseases, including hepatocellular carcinoma (HCC). This study aims to investigate the disparities in the composition and functionality of the hepatic microbiota between tumor tissues and adjacent normal liver tissues, and their implications in the etiology of HCC. We conducted a comparative analysis of the hepatic microbiome between adjacent normal liver tissues and tumor tissues from HCC patients. Samples were categorized according to the modified Union for International Cancer Control (mUICC) staging system into Non-tumor, mUICC stage I, mUICC stage II, and mUICC stage III groups. Microbial richness and community composition were analyzed, and phylogenetic profiles were examined to identify significantly altered microbial taxa among the groups. Predicted metabolic pathways were analyzed using PICRUSt2. Our analysis did not reveal significant differences in microbial richness and community composition with the development of HCC. However, phylogenetic profiling identified significantly altered microbial taxa among the groups. Sphingobium, known for degrading polychlorinated biphenyls (PCBs), exhibited a significantly negative correlation with clinical indices in HCC patients. Conversely, Sphingomonas, a gut bacterium associated with various liver diseases, showed a positive correlation. Predicted metabolic pathways suggested a correlation between atrazine degradation and valine, leucine, and isoleucine biosynthesis with mUICC stage and tumor size. Our results underscore the critical link between hepatic microbial composition and function and the HCC tumor stage, suggesting a potentially pivotal role in the development of HCC. These findings highlight the importance of targeting the hepatic microbiome for therapeutic strategies in HCC.

Indexed as

Carcinoma, HepatocellularLiverLiver NeoplasmsPhylogenyAdultAgedBacteriaFemaleGastrointestinal MicrobiomeHumansMaleMicrobiotaMiddle AgedNeoplasm StagingGut-liver axisHepatocellular carcinomaPhylogenetic analysisTaxa associationsTumor tissues

Identifiers

PMID39478014
PMCPMC11525880

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.