Evidence map›Paper›PMID 39477922›Full record

ArticleNature communications2024

Clr4

Hyun-Soo Kim, Benjamin Roche, Sonali Bhattacharjee, Leila Todeschini, An-Yun Chang, Christopher Hammell, André Verdel, Robert A Martienssen

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. RiboCop surveils pre-rRNA processing by Dicer in cellular quiescence.bioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. Article
  8. Fungi as models of centromere innovation: from DNA sequence to 3-dimensional arrangement.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hyun-Soo KimCold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.ORCID 0000-0002-1792-1928
Benjamin RocheCold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.
Sonali BhattacharjeeCold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.
Leila TodeschiniInstitute for Advanced Biosciences, UMR InsermU1209/CNRS5309/UGA, University of Grenoble Alpes, Grenoble, France.ORCID 0000-0002-6064-7362
An-Yun ChangCold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.
Christopher HammellCold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA.ORCID 0000-0002-5961-0976
André VerdelInstitute for Advanced Biosciences, UMR InsermU1209/CNRS5309/UGA, University of Grenoble Alpes, Grenoble, France.ORCID 0000-0001-6048-3794
Robert A MartienssenCold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA. martiens@cshl.edu.ORCID 0000-0003-1285-9608

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
OSCILLATORY GENE EXPRESSION AND THE MAINTENANCE OF TEMPORAL PATTERNINGR01GM117406 · NIGMS · COLD SPRING HARBOR LABORATORY · PI HAMMELL, CHRISTOPHER MARTIN · 2016 to 2025
$4.0M
RNA Interference and Heterochromatic Silencing in Replication and QuiescenceR35GM144206 · NIGMS · COLD SPRING HARBOR LABORATORY · PI ROBERT A MARTIENSSEN · 2022 to 2026
$2.2M
National Science Foundation (NSF) 2217560NCI NIH HHS P30 CA045508NIGMS NIH HHS R01 GM117406NIGMS NIH HHS R35 GM144206U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 5PP30CA045508U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM117406U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM144206
6 · The paper itself

Abstract

Transcriptional silencing by RNAi paradoxically relies on transcription, but how the transition from transcription to silencing is achieved has remained unclear. The Cryptic Loci Regulator complex (CLRC) in Schizosaccharomyces pombe is a cullin-ring E3 ligase required for silencing that is recruited by RNAi. We found that the E2 ubiquitin conjugating enzyme Ubc4 interacts with CLRC and mono-ubiquitinates the histone H3K9 methyltransferase Clr4

Indexed as

Cell Cycle ProteinsHeterochromatinSchizosaccharomycesSchizosaccharomyces pombe ProteinsUbiquitinationCentromereChromosomal Proteins, Non-HistoneGene Expression Regulation, FungalGene SilencingHistone-Lysine N-MethyltransferaseHistonesMethyltransferasesPhase SeparationRNA, UntranslatedTranscription, GeneticUbiquitin-Conjugating EnzymesCell Cycle ProteinsChromosomal Proteins, Non-Histoneclr4 protein, S pombeHeterochromatinHistone-Lysine N-MethyltransferaseHistonesMethyltransferasesRNA, UntranslatedSchizosaccharomyces pombe ProteinsSwi6 protein, S pombeUbiquitin-Conjugating Enzymes

Identifiers

PMID39477922
PMCPMC11526040

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.