Evidence map›Paper›PMID 39476961›Full record

ArticleThe Journal of biological chemistry2024

Epididymis-specific RNase A family genes regulate fertility and small RNA processing.

Joshua F Shaffer, Alka Gupta, Geetika Kharkwal, Edgardo E Linares, Andrew D Holmes, Julian R Swartz, Sol Katzman, Upasna Sharma

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Joshua F ShafferDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA.
Alka GuptaDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA.
Geetika KharkwalBoost Neuroscience Inc, Menlo Park, California, USA.
Edgardo E LinaresUniversity of Colorado Anshutz Medical Campus, Aurora, Colorado, USA.
Andrew D HolmesDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA.
Julian R SwartzDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA.
Sol KatzmanGenomics Institute, University of California, Santa Cruz, California, USA.
Upasna SharmaDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA. Electronic address: upsharma@ucsc.edu.

Funding

Training Program in Molecular, Cell, and Developmental BiologyT32GM133391 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Needhi Bhalla · 2019 to 2026
$3.0M
Paternal contributions to offspring health: Intergenerational epigenetic inheritance via sperm small RNAsDP2AG066622 · NIA · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SHARMA, UPASNA · 2019 to 2019
$2.3M
LTQ XL Linear Quadrupole Ion Trap Mass SpectrometerS10RR025622 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOHLSTAEDT, LORI · 2009 to 2009
$463k
NCRR NIH HHS S10 RR025622NIA NIH HHS DP2 AG066622NIGMS NIH HHS T32 GM133391
6 · The paper itself

Abstract

Sperm small RNAs are implicated in intergenerational transmission of paternal environmental effects. Small RNAs generated by the cleavage of tRNAs, known as tRNA fragments (tRFs) or tRNA-derived RNAs (tDRs or tsRNAs), are an abundant class of RNAs in mature sperm and can be modulated by environmental conditions. The biogenesis of tRFs in the male reproductive tract remains poorly understood. Angiogenin, a member of the ribonuclease A superfamily (RNase A), cleaves tRNAs to generate tRFs in response to cellular stress. Four paralogs of Angiogenin, namely Rnase9, Rnase10, Rnase11, and Rnase12, are specifically expressed in the epididymis-a long, convoluted tubule where sperm mature and acquire fertility and motility. Here, by generating mice deleted for all four genes (Rnase9-12-/-, termed "KO" for Knock Out), we report that these genes regulate fertility and small RNA levels. KO male mice are sterile; KO sperm fertilized oocytes in vitro but failed to efficiently fertilize oocytes in vivo due to an inability of sperm to pass through the utero-tubular junction. Intriguingly, there were decreased levels of tRFs and rRNAs (rRNA-derived small RNAs or rsRNAs) in the KO epididymis and epididymal luminal fluid, although RNases 9-12 did not show ribonucleolytic activity in vitro. Importantly, KO sperm showed a dramatic decrease in the levels of tRFs, demonstrating a role of epididymis-specific Rnase9-12 genes in regulating sperm small RNA composition. Together, our results reveal an unexpected role of four epididymis-specific noncanonical ribonuclease A family genes in regulating fertility and small RNA processing.

Indexed as

EpididymisFertilityMice, KnockoutRibonuclease, PancreaticAnimalsFemaleMaleMiceRNA Processing, Post-TranscriptionalRNA, TransferSpermatozoaRibonuclease, PancreaticRNA, Transferepididymisfertilityreproductionribonucleasessmall RNAssperm

Identifiers

PMID39476961
PMCPMC11647505

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.