Evidence map›Paper›PMID 39475651›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

A CRISPR-Cas9 knockout screening identifies IRF2 as a key driver of OAS3/RNase L-mediated RNA decay during viral infection.

Sunwoo Oh, Gisselle Santiago, Lavanya Manjunath, Junyi Li, Alexis Bouin, Bert L Semler, Rémi Buisson

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. A CRISPR-Cas9 knockout screening identifies IRF2 as a key driver of OAS3/RNase L-mediated RNA decay during viral infection.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sunwoo OhDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697.ORCID 0000-0001-9205-4660
Gisselle SantiagoDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697.ORCID 0000-0003-3601-0019
Lavanya ManjunathDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697.
Junyi LiDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697.ORCID 0009-0002-0982-1377
Alexis BouinDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA 92697.
Bert L SemlerDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA 92697.ORCID 0000-0002-2424-5155
Rémi BuissonDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697.ORCID 0000-0002-7196-8209

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
Molecular Mechanisms of APOBEC-Induced Mutagenesis in CancerR37CA252081 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Remi Buisson · 2021 to 2026
$2.5M
Nuclear functions co-opted by human rhinovirus during replication in the cytoplasm of infected cellsR01AI155962 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI GERSHON, PAUL D, SEMLER, BERT L · 2021 to 2025
$2.3M
American Cancer Society (ACS) RSG-24-1249960-01-DMCHHS | National Institutes of Health (NIH) R01-AI155962HHS | National Institutes of Health (NIH) R37-CA252081NCI NIH HHS P30 CA062203NCI NIH HHS R37 CA252081NIAID NIH HHS R01 AI155962
6 · The paper itself

Abstract

OAS-RNase L is a double-stranded RNA-induced antiviral pathway triggered in response to diverse viral infections. Upon activation, OAS-RNase L suppresses virus replication by promoting the decay of host and viral RNAs and inducing translational shutdown. However, whether OASs and RNase L are the only factors involved in this pathway remains unclear. Here, we develop CRISPR-Translate, a FACS-based genome-wide CRISPR-Cas9 knockout screening method that uses translation levels as a readout and identifies IRF2 as a key regulator of OAS3. Mechanistically, we demonstrate that IRF2 promotes basal expression of OAS3 in unstressed cells, allowing a rapid activation of RNase L following viral infection. Furthermore, IRF2 works in concert with the interferon response through STAT2 to further enhance OAS3 expression. We propose that IRF2-induced RNase L is critical in enabling cells to mount a rapid antiviral response immediately after viral infection, serving as the initial line of defense. This rapid response provides host cells the necessary time to activate additional antiviral signaling pathways, forming secondary defense waves.

Indexed as

2',5'-Oligoadenylate SynthetaseCRISPR-Cas SystemsEndoribonucleasesInterferon Regulatory Factor-2RNA StabilityGene Knockout TechniquesHEK293 CellsHumansRNA, ViralSTAT2 Transcription FactorVirus DiseasesVirus Replication2-5A-dependent ribonuclease2',5'-Oligoadenylate SynthetaseEndoribonucleasesInterferon Regulatory Factor-2IRF2 protein, humanOAS3 protein, humanRNA, ViralSTAT2 Transcription FactorCRISPR screeninnate immunityRNA decayRNase Lvirus

Identifiers

PMID39475651
PMCPMC11551408

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.