Evidence map›Paper›PMID 39475287›Full record

ArticleApplied and environmental microbiology2024

Pangenome analysis of

Federica Maggi, Anna Maria Giuliodori, Anna Brandi, Lucia Cimarelli, Roberto Alcántara, Stefano Pallotti, Consuelo Amantini, Dezemona Petrelli, Attilio Fabbretti, Roberto Spurio and 1 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Advancing sustainable practices withAIMS microbiology · 2025
    Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Federica Maggi *School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Anna Maria Giuliodori *School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.ORCID 0000-0002-6567-1118
Anna BrandiSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Lucia CimarelliSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Roberto AlcántaraBiomolecules Laboratory, Faculty of Health Sciences, Universidad Peruana de Ciencias Aplicadas, Lima, Peru.
Stefano PallottiSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Consuelo AmantiniSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Dezemona PetrelliSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Attilio FabbrettiSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Roberto SpurioSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.
Valerio NapolioniSchool of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy.ORCID 0000-0002-4378-6838

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

IMPORTANCE: The development of sequencing technologies has led to an exponential increase in microbial sequencing data. Accurately identifying bacterial species remains a challenge because of extensive intra-species variability, the need for multiple identification methods, and the rapid rate of taxonomic changes. A substantial contribution to elucidating the relationships among related bacterial strains comes from comparing their genomic sequences. This comparison also allows for the identification of the "pangenome," which is the set of genes shared by all individuals of a species, as well as the set of genes that are unique to subpopulations. Here, we applied this approach to

Indexed as

Genome, BacterialPaenibacillusPaenibacillus polymyxaPhylogenyDNA, BacterialMultilocus Sequence TypingDNA, Bacterialevolutionary analysisgenomicsPaenibacillus polymyxapangenome

Identifiers

PMID39475287
PMCPMC11577871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.