Evidence map›Paper›PMID 39475284›Full record

ArticleApplied and environmental microbiology2024

Directed evolution of bacteriophages: thwarted by prolific prophage.

Tracey Lee Peters, Jacob Schow, Emma Spencer, James T Van Leuven, Holly Wichman, Craig Miller

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Bacteriophage density influences the rate of resistance evolution.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Viral adaptations to alternative hosts in the honey bee pathogenbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Tracey Lee PetersInstitute for Modeling Collaboration and Innovation, University of Idaho, Moscow, Idaho, USA.ORCID 0000-0003-4644-8743
Jacob SchowDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA.
Emma SpencerDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA.
James T Van LeuvenDepartment of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, Idaho, USA.
Holly WichmanInstitute for Modeling Collaboration and Innovation, University of Idaho, Moscow, Idaho, USA.
Craig MillerDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA.

Funding

Sequence-structure-function relationships in human visual photopigmentsP20GM104420 · NIGMS · UNIVERSITY OF IDAHO · PI VAN LEUVEN, JAMES · 2015 to 2024
$22.9M
Patterns of Adaptive EvolutionR01GM076040 · NIGMS · UNIVERSITY OF IDAHO · PI MILLER, CRAIG R, WICHMAN, HOLLY A · 2006 to 2021
$3.6M
DNA-PROTEIN INTERACTIONS OF TELOMERES IN YEASTF32GM010442 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GOTTSCHLING, DANIEL E. · 1987 to 1988
–
HHS | NIH | National Institute of General Medical Sciences (NIGMS) 3P20GM10442-09S1HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM076040HHS | NIH | National Institute of General Medical Sciences (NIGMS) P20GM104420NIGMS NIH HHS P20 GM104420NIGMS NIH HHS R01 GM076040
6 · The paper itself

Abstract

Various directed evolution methods exist that seek to procure bacteriophages with expanded host ranges, typically targeting phage-resistant or non-permissive bacterial hosts. The general premise of these methods involves propagating phage(s) on multiple bacterial hosts, pooling the lysate, and repeating this process until phage(s) can form plaques on the target host(s). In theory, this produces a lysate containing input phages and their evolved phage progeny. However, in practice, this lysate can also include prophages originating from bacterial hosts. Here, we describe our experience implementing one directed evolution method, the Appelmans protocol, to study phage evolution in the

Indexed as

Directed Molecular EvolutionHost SpecificityProphagesPseudomonas aeruginosaPseudomonas PhagesLysogenyAppelmansbacteriophagedirected evolutionhost rangeprophagePseudomonas aeruginosa

Identifiers

PMID39475284
PMCPMC11577772

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.