Evidence map›Paper›PMID 39475190›Full record

ArticleNucleic acids research2024

Uncoupling FRUITFULL's functions through modification of a protein motif identified by co-ortholog analysis.

Kai Thoris, Miguel Correa Marrero, Martijn Fiers, Xuelei Lai, Iris E Zahn, Xiaobing Jiang, Mark Mekken, Stefan Busscher, Stuart Jansma, Max Nanao and 6 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Horticulture research · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Kai ThorisLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Miguel Correa MarreroBioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Martijn FiersBusiness Unit Bioscience, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Xuelei LaiLaboratoire de Physiologie Cellulaire et Végétale, CNRS, CEA, Université Grenoble Alpes, INRAE, IRIG, CEA, 38000 Grenoble, Grenoble, France.ORCID 0000-0003-4989-2444
Iris E ZahnLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Xiaobing JiangLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0003-4887-6389
Mark MekkenLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Stefan BusscherLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Stuart JansmaLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Max NanaoStructural Biology, European Synchrotron Radiation Facility, 71 ave. des Martyrs, 38000 Grenoble, France.
Dick de RidderBioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-4944-4310
Aalt D J van DijkBioinformatics Group, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Gerco C AngenentLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.
Richard G H ImminkLaboratory of Molecular Biology, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0002-0182-4138
Chloe ZubietaLaboratoire de Physiologie Cellulaire et Végétale, CNRS, CEA, Université Grenoble Alpes, INRAE, IRIG, CEA, 38000 Grenoble, Grenoble, France.ORCID 0000-0003-4558-9333
Marian BemerBusiness Unit Bioscience, Wageningen University & Research, 6708 PB Wageningen, the Netherlands.ORCID 0000-0001-9285-7199

Funding

Agence National de la Recherche ANR-19-CE20-0021Nederlandse Organisatie voor Wetenschappelijk Onderzoek ALWOP.199
6 · The paper itself

Abstract

Many plant transcription factors (TFs) are multifunctional and regulate growth and development in more than one tissue. These TFs can generally associate with different protein partners depending on the tissue type, thereby regulating tissue-specific target gene sets. However, how interaction specificity is ensured is still largely unclear. Here, we examine protein-protein interaction specificity using subfunctionalized co-orthologs of the FRUITFULL (FUL) subfamily of MADS-domain TFs. In Arabidopsis, FUL is multifunctional, playing important roles in flowering and fruiting, whereas these functions have partially been divided in the tomato co-orthologs FUL1 and FUL2. By linking protein sequence and function, we discovered a key amino acid motif that determines interaction specificity of MADS-domain TFs, which in Arabidopsis FUL determines the interaction with AGAMOUS and SEPALLATA proteins, linked to the regulation of a subset of targets. This insight offers great opportunities to dissect the biological functions of multifunctional MADS TFs.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantMADS Domain ProteinsAmino Acid MotifsAmino Acid SequenceFruitHomeodomain ProteinsProtein BindingSolanum lycopersicumTranscription FactorsArabidopsis ProteinsGAI protein, ArabidopsisHomeodomain ProteinsMADS Domain ProteinsTranscription Factors

Identifiers

PMID39475190
PMCPMC11602133

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.