Evidence map›Paper›PMID 39475123›Full record

SynthesisJournal of proteome research2024

Phosphorylation in the

Oscar J M Camacho, Kerry A Ramsbottom, Ananth Prakash, Zhi Sun, Yasset Perez Riverol, Emily Bowler-Barnett, Maria Martin, Jun Fan, Eric W Deutsch, Juan Antonio Vizcaíno and 1 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Journal of proteome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. An AI-Ready Phosphorylation Meta-Analysis forJournal of proteome research · 2026
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. The PRIDE database at 20 years: 2025 update.Nucleic acids research · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Oscar J M CamachoInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, United Kingdom.ORCID 0000-0002-8873-8063
Kerry A RamsbottomInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, United Kingdom.ORCID 0000-0002-7432-9293
Ananth PrakashEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, United Kingdom.
Zhi SunInstitute for Systems Biology, Seattle, Washington 98109, United States.
Yasset Perez RiverolEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, United Kingdom.
Emily Bowler-BarnettEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, United Kingdom.
Maria MartinEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, United Kingdom.
Jun FanEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, United Kingdom.
Eric W DeutschInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0001-8732-0928
Juan Antonio VizcaínoEuropean Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge CB10 1SD, United Kingdom.ORCID 0000-0002-3905-4335
Andrew R JonesInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7BE, United Kingdom.ORCID 0000-0001-6118-9327

Funding

Shortening the development cycle time of Trans Proteomic Pipeline tools with high performance computingR01GM087221 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC, MORITZ, ROBERT L · 2010 to 2021
$6.0M
Global proteomics mass spectrometry data sharing infrastructureR24GM148372 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Nuno Bandeira · 2023 to 2026
$2.8M
NIGMS NIH HHS R01 GM087221NIGMS NIH HHS R24 GM148372Wellcome Trust
6 · The paper itself

Abstract

Malaria is a deadly disease caused by Apicomplexan parasites of the

Indexed as

PhosphoproteinsPlasmodium falciparumProteomeProtozoan ProteinsAmino Acid MotifsDatabases, ProteinHumansMalaria, FalciparumPhosphorylationProtein Processing, Post-TranslationalProteomicsTandem Mass SpectrometryPhosphoproteinsProteomeProtozoan Proteinsbioinformaticscell signalingmalariameta-analysisphosphoproteomicsPlasmodium falciparum

Identifiers

PMID39475123
PMCPMC11629380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.