Evidence map›Paper›PMID 39474046›Full record

ArticleBrain communications2024

Adding the third dimension: 3D convolutional neural network diagnosis of temporal lobe epilepsy.

Erik Kaestner, Reihaneh Hassanzadeh, Ezequiel Gleichgerrcht, Kyle Hasenstab, Rebecca W Roth, Allen Chang, Theodor Rüber, Kathryn A Davis, Patricia Dugan, Ruben Kuzniecky and 9 more

Abstract read
In one paragraph

Article in Brain communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Erik KaestnerDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, San Diego, CA 92037, USA.ORCID https://orcid.org/0000-0003-3252-5365
Reihaneh HassanzadehElectrical & Computer Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Ezequiel GleichgerrchtDepartment of Neurology, Emory University, Atlanta, GA 30322, USA.
Kyle HasenstabDepartment of Mathematics and Statistics, San Diego State University, San Diego, CA 92115, USA.
Rebecca W RothDepartment of Neurology, Emory University, Atlanta, GA 30322, USA.
Allen ChangDepartment of Neurology, Medical University of South Carolina, Charleston, SC 29425, USA.ORCID https://orcid.org/0000-0001-8483-3226
Theodor RüberDepartment of Epileptology, University Hospital Bonn, Bonn 53127, Germany.ORCID https://orcid.org/0000-0002-6180-7671
Kathryn A DavisDepartment of Neurology, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0002-7020-6480
Patricia DuganDepartment of Neurology, NYU Langone Medical Centre, New York City, NY 10016, USA.
Ruben KuznieckyDepartment of Neurology, School of Medicine at Hofstra/Northwell, Hempstead, NY 11549, USA.
Julius FridrikssonDepartment of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA.
Alexandra ParashosDepartment of Neurology, Medical University of South Carolina, Charleston, SC 29425, USA.
Anto I BagićDepartment of Neurology, University of Pittsburgh, Pittsburgh, PA 15261, USA.
Daniel L DraneDepartment of Neurology, Emory University, Atlanta, GA 30322, USA.
Simon S KellerDepartment of Pharmacology and Therapeutics, University of Liverpool, Liverpool L9 7LJ, UK.
Vince D CalhounCenter for Translational Research in Neuroimaging and Data Science on Systems, Atlanta, GA 30303, USA.
Anees AbrolCenter for Translational Research in Neuroimaging and Data Science on Systems, Atlanta, GA 30303, USA.
Leonardo BonilhaDepartment of Neurology, Emory University, Atlanta, GA 30322, USA.
Carrie R McDonaldDepartment of Radiation Medicine and Applied Sciences, University of California San Diego, San Diego, CA 92037, USA.

Funding

Lifespan Epilepsy Network Signatures (LENS): Leveraging ENIGMA-Epilepsy to Predict Cognitive Aging and Surgical OutcomesR01NS122827 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CARRIE R MCDONALD · 2021 to 2026
$3.8M
Optimized Intracranial EEG Targeting in Focal Epilepsy based upon Neuroimaging ConnectomicsR01NS116504 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI DAVIS, KATHRYN ADAMIAK · 2021 to 2025
$3.3M
Development of a personalized neurostimulation protocol for memory mapping in epilepsyK01NS124831 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KAESTNER, ERIK JORDAN · 2022 to 2024
$339k
NINDS NIH HHS K01 NS124831NINDS NIH HHS R01 NS116504NINDS NIH HHS R01 NS122827
6 · The paper itself

Abstract

Convolutional neural networks (CNN) show great promise for translating decades of research on structural abnormalities in temporal lobe epilepsy into clinical practice. Three-dimensional CNNs typically outperform two-dimensional CNNs in medical imaging. Here we explore for the first time whether a three-dimensional CNN outperforms a two-dimensional CNN for identifying temporal lobe epilepsy-specific features on MRI. Using 1178 T1-weighted images (589 temporal lobe epilepsy, 589 healthy controls) from 12 surgical centres, we trained 3D and 2D CNNs for temporal lobe epilepsy versus healthy control classification, using feature visualization to identify important regions. The 3D CNN was compared to the 2D model and to a randomized model (comparison to chance). Further, we explored the effect of sample size with subsampling, examined model performance based on single-subject clinical characteristics, and tested the impact of image harmonization on model performance. Across 50 datapoints (10 runs with 5-folds each) the 3D CNN median accuracy was 86.4% (35.3% above chance) and the median

Indexed as

convolutional neural networkmachine learningMRI-negative epilepsystructural neuroimagingtemporal lobe epilepsy

Identifiers

PMID39474046
PMCPMC11520928

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.