Evidence map›Paper›PMID 39472897›Full record

ArticleBMC cancer2024

Integration of bioinformatics and cellular experiments unveils the role of SYT12 in gastric cancer.

Xingdong Niu, Fubin Ma, Fangying Li, Cunchun Wei, Junrui Zhang, Zhenhua Gao, Junhong Wang, Mingxu Da

RetractedAbstract readRetracted Publication
In one paragraph

Article in BMC cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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  3. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Xingdong NiuThe First Clinical Medical College, Gansu University of Chinese Medicine, Lanzhou, China.
Fubin MaSchool of Clinical Medicine, Ningxia Medical University, Yinchuan, China.
Fangying LiThe First Clinical Medical College, Gansu University of Chinese Medicine, Lanzhou, China.
Cunchun WeiThe First Clinical Medical College, Gansu University of Chinese Medicine, Lanzhou, China.
Junrui ZhangThe First Clinical Medical College, Gansu University of Chinese Medicine, Lanzhou, China.
Zhenhua GaoDepartment of General Surgery, The First People's Hospital of Baiyin (Third Affiliated Hospital of Gansu University of Traditional Chinese Medicine), Baiyin, China.
Junhong WangThe First Clinical Medical College, Lanzhou University, 222 Tianshui South Road, Lanzhou, 730000, China. wangjunhong126@126.com.
Mingxu DaThe First Clinical Medical College, Lanzhou University, 222 Tianshui South Road, Lanzhou, 730000, China. ldyy_damx@lzu.edu.cn.

Funding

the Science and Technology Planning Project of Gansu Province 21CX6FD163the Second Group of Longyuan Young Talents in Gansu Province 2023-11
6 · The paper itself

Abstract

objectiveThis study employs integrated bioinformatics analysis and in vitro cellular experiments to elucidate the role of Synaptotagmin-12 (SYT12) in the progression of gastric cancer.

methodsWe utilized databases and platforms such as Xiantao Academic Tools, UALCAN, Kaplan-Meier plotter analysis, and The Cancer Genome Atlas (TCGA) to extract datasets on SYT12 in gastric cancer. We analyzed the relationship between SYT12 expression and the clinicopathological features, prognosis, diagnosis, and immune infiltration of stomach adenocarcinoma (STAD) patients. Verification was conducted using samples from 31 gastric cancer patients. Additionally, in vitro cellular experiments were performed to determine the role and potential mechanisms of SYT12 in the malignant behavior of gastric cancer cells.

resultsComprehensive bioinformatics analysis indicated that SYT12 is highly expressed in most cancers and is associated with promoter DeoxyriboNucleic Acid (DNA) methylation levels. SYT12 expression correlated with clinicopathological features, immune cell infiltration, immune checkpoint gene expression, and poor prognosis in STAD patients. In vitro experiments suggest that SYT12 may promote the proliferation and migration of gastric cancer cells by inducing epithelial-mesenchymal transition (EMT).

conclusionsThis study highlights the significant role of SYT12 in gastric cancer, suggesting its potential as a new target for early diagnosis, treatment, immunological, and prognostic evaluation in gastric cancer, offering new insights for precision medicine in this disease.

Indexed as

Computational BiologyEpithelial-Mesenchymal TransitionStomach NeoplasmsSynaptotagminsAdenocarcinomaAgedBiomarkers, TumorCell Line, TumorCell MovementCell ProliferationDNA MethylationFemaleGene Expression Regulation, NeoplasticHumansMaleMiddle AgedBiomarkers, TumorSynaptotagminsBioinformaticsEMTGastric cancerMigrationProliferationSYT12

Identifiers

PMID39472897
PMCPMC11520883

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.