Evidence map›Paper›PMID 39472826›Full record

ArticleBMC genomics2024

Unveiling putative modulators of mutable collagenous tissue in the brittle star Ophiomastix wendtii: an RNA-Seq analysis.

Reyhaneh Nouri, Vladimir Mashanov, April Harris, Gari New, William Taylor, Daniel Janies, Robert W Reid, Denis Jacob Machado

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. UV photodamage pathways and the evolutionary selection of thymine over uracil in early genetic systems.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Reyhaneh NouriDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.
Vladimir MashanovWake Forest Institute for Regenerative Medicine, 391 Technology Way, Winston-Salem, 27101, NC, USA.
April HarrisDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.
Gari NewDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.
William TaylorDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.
Daniel JaniesDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.
Robert W ReidDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA.
Denis Jacob MachadoDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, 9331 Robert D. Snyder Rd., Charlotte, 28223, NC, USA. dmachado@charlotte.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Collagenous connective tissue, found throughout the bodies of metazoans, plays a crucial role in maintaining structural integrity. This versatile tissue has the potential for numerous biomedical applications, including the development of innovative collagen-based biomaterials. Inspiration for such advancements can be drawn from echinoderms, a group of marine invertebrates that includes sea stars, sea cucumbers, brittle stars, sea urchins, and sea lilies. Through their nervous system, these organisms can reversibly control the pliability of their connective tissue components (i.e., tendons and ligaments) that are composed of mutable collagenous tissue (MCT). The variable tensile properties of the MCT allow echinoderms to perform unique functions, including postural maintenance, reduction of muscular energy use, autotomy to avoid predators, and asexual reproduction through fission. The changes in the tensile strength of MCT structures are specifically controlled by specialized neurosecretory cells called juxtaligamental cells. These cells release substances that either soften or stiffen the MCT. So far, only a few of these substances have been purified and characterized, and the genetic underpinning of MCT biology remains unknown. Therefore, we have conducted this research to identify MCT-related genes in echinoderms as a first step towards a better understanding of the MCT molecular control mechanisms. Our ultimate goal is to unlock new biomaterial applications based on this knowledge. In this project, we used RNA-Seq to identify and annotate differentially expressed genes in the MCT structures of the brittle star Ophiomastix wendtii. As a result, we present a list of 16 putative MCT modulator genes, which will be validated and characterized in forthcoming functional analyses.

Indexed as

CollagenEchinodermataRNA-SeqAnimalsGene Expression ProfilingTranscriptomeCollagenEchinodermGene annotationHigh-throughput sequencingHistologyMutable collagenous tissue

Identifiers

PMID39472826
PMCPMC11520437

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.