Evidence map›Paper›PMID 39472626›Full record

ArticleScientific data2024

Chromosome-level genome assembly of Megachile lagopoda (Linnaeus, 1761) (Hymenoptera: Megachilidae).

Dan Zhang, Jianfeng Jin, Zeqing Niu, Michael C Orr, Feng Zhang, Rafael R Ferrari, Qingtao Wu, Qingsong Zhou, Wa Da, Arong Luo and 1 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Dan ZhangCharacteristic Laboratory of Forensic Science in Universities of Shandong Province, Shandong University of Political Science and Law, Jinan, P. R. China.
Jianfeng JinDepartment of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, P. R. China.
Zeqing NiuKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, P. R. China. niuzq@ioz.ac.cn.
Michael C OrrEntomologie, Staatliches Museum für Naturkunde Stuttgart, Stuttgart, Germany.
Feng ZhangDepartment of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, P. R. China.ORCID 0000-0002-1371-266X
Rafael R FerrariKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, P. R. China.ORCID 0000-0003-3570-3841
Qingtao WuKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, P. R. China.
Qingsong ZhouKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, P. R. China.
Wa DaTibet Plateau Institute of Biology, Tibet, P. R. China.
Arong LuoKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, P. R. China. luoar@ioz.ac.cn.ORCID 0000-0001-9652-5896
Chaodong ZhuKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, P. R. China.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31772487National Natural Science Foundation of China (National Science Foundation of China) 32300382
6 · The paper itself

Abstract

Megachile is one of the largest bee genera, including nearly 1,500 species, but very few chromosome-level assemblies exist for this group or the family Megachilidae. Here, we report the chromosome-level genome assembly of Megachile lagopoda collected from Xizang, China. Using PacBio CLR long reads and Hi-C data, we assembled a genome of 256.83 Mb with 96.08% of the assembly located on 16 chromosomes. Our assembly contains 266 scaffolds, with a scaffold N50 length of 15.6 Mb, and BUSCO completeness of 99.20%. We masked 27.10% (69.61 Mb) of the assembly as repetitive elements, identified 459 non-coding RNAs, and predicted 11,157 protein-coding genes. This high-quality genome of M. lagopoda represents an important step forward for our knowledge of megachilid genomics and bee evolution overall.

Indexed as

Genome, InsectAnimalsBeesChinaChromosomes, Insect

Identifiers

PMID39472626
PMCPMC11522480

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.