Evidence map›Paper›PMID 39472585›Full record

ArticleNPJ biofilms and microbiomes2024

A phosphate starvation induced small RNA promotes Bacillus biofilm formation.

Yulong Li, Xianming Cao, Yunrong Chai, Ruofu Chen, Yinjuan Zhao, Rainer Borriss, Xiaolei Ding, Xiaoqin Wu, Jianren Ye, Dejun Hao and 6 more

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Small non-coding RNAMicrobiology spectrum · 2026
    Article
  3. Journal of bacteriology · 2026
    Review
  4. Review
  5. Process optimization ofFrontiers in nutrition · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Biofilm Dispersal inMicroorganisms · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yulong Li *Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.ORCID http://orcid.org/0000-0001-5072-9834
Xianming Cao *Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Yunrong ChaiDepartment of Biology, Northeastern University, Boston, USA.ORCID http://orcid.org/0000-0002-5903-5529
Ruofu ChenCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Yinjuan ZhaoCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Rainer BorrissInstitut für Biologie, Humboldt Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0003-3726-1004
Xiaolei DingCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Xiaoqin WuCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Jianren YeCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Dejun HaoCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China. djhao@njfu.edu.cn.
Jian HeCollege of Life Science, Nanjing Agricultural University, Nanjing, China.
Guibin WangCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Mingmin CaoCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Chunliang JiangCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Zhengmin HanCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China.
Ben FanCo-Innovation Center for Sustainable Forestry in Southern China, College of Forestry and Grassland, Nanjing Forestry University, Nanjing, China. fanben2000@gmail.com.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31970097
6 · The paper itself

Abstract

Currently, almost all known regulators involved in bacterial phosphorus metabolism are proteins. In this study, we identified a conserved new small regulatory RNA (sRNA), named PhoS, encoded in the 3' untranslated region (UTR) of the phoPR genes in Bacillus velezensis and B. subtilis. Expression of phoS is strongly induced upon phosphorus scarcity and stimulated by the transcription factor PhoP. Conversely, PhoS positively regulates PhoP translation by binding to the ribosome binding site (RBS) of phoP mRNA. PhoS can promote Bacillus biofilm formation through, at least in part, enhancing the expression of the matrix-related genes, such as the eps genes and the tapA-sipW-tasA operon. The positive regulation of phoP expression by PhoS contributes to the promoting effect of PhoS on biofilm formation. sRNAs regulating biofilm formation have rarely been reported in gram-positive Bacillus species. Here we highlight the significance of sRNAs involved in two important biological processes: phosphate metabolism and biofilm formation.

Indexed as

BacillusBacterial ProteinsBiofilmsGene Expression Regulation, BacterialPhosphatesRNA, BacterialBacillus subtilisOperonRNA, Small UntranslatedBacterial ProteinsPhoP protein, BacteriaPhosphatesRNA, BacterialRNA, Small Untranslated

Identifiers

PMID39472585
PMCPMC11522486

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.